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12-5334-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5539191 [Map]; Strand: w
      • AT3G16340.2 - [+] show detail - pleiotropic drug resistance 1
        Distance: -597; Region: promoter
      • AT3G16340.1 - [+] show detail - pleiotropic drug resistance 1
        Distance: -706; Region: promoter
    Flanking Genome Sequence: 12-5334-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATAACC AAGCTGGTCA CCAAATCCAT CTTATGTAGT 
    GGCATAACAG AACCAATCTT GGTCACCAAA TACAGTAGTT TCACCTTTCT 
    CTTTCTCCAA ATATAATAAA AAACTTTTTT ATTTTGTGCA AAATAAACTT 
    TAGTGAGATA TATTGAGCAA ATATGTATAT ATATATATAT AAAGATTTCT 
    TGAGACGATA TCTCTTTGCC TCTTTGGGTC ATTGTTAATT CCATGTATCG 
    ATTTTTAGGG TTGAAGAGAC TTGTNTGTAA CTNTGACCAA TTGTCTACTC 
    TTTTTAGACC ACAATGTTAG TAAGTATGTA GGTAGGACTT GTTTCGAATG 
    TGATGATTTA TTTAGACCCA NACAAATTAT TTACTAGACC CATTGGTGTT 
    CTATTATTNA CTGTTNGAAA GAAGTTGTTT TTGTCGTTGA TTGTNNACTA 
    GTATTTCAAA GAAAAGGGTA TGCATAGTTT AAACTTCAAG GAAATCCCTT 
    ATATATAGTA AAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24789353 [Map]; Strand: c
      • AT5G61680.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: -1338; Region: intergenic
      • AT5G61690.1 - [+] show detail - ABC2 homolog 15
        Distance: 142; Region: intergenic
    Flanking Genome Sequence: 12-5334-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAT 
    TCAACAAAGA CAAAACTCAA TTTAAACTTT TTCTAAAACT TTAACCCCTG 
    TACTATATAG GAACAACTCA ATTTTTCACC AAAAACAAAC TCAACTTTGT 
    TCACGATTCT CATTTTCTAA CAACACGAAA AATAAATCGT TAAATCATAA 
    ATCGATCACN GATACCACGA ACCCCTTGTC GTAGGCTTTT ATGTCCTAAT 
    GCATTTGGTG ATGGTGGACG TGTCACCGGA ACATTCTGTG GTACCCGCAT 
    CTCTGATGAG TGTCCAGAGA TGCACATCGA CCCCGAGCCG TCTTGTTGCC 
    AGTACACTTC CACCATTACT CCACTTGGAG ACTCTGCGTT TTCTGTATCA 
    GGGATC

AT3G16340.1

Model type
Protein coding
Short Description
pleiotropic drug resistance 1
Computational Description
pleiotropic drug resistance 1 (PDR1); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: drug transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), Pleiotropic drug resistance protein PDR (InterPro:IPR005285), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 7 (TAIR:AT1G15210.1); Has 382062 Blast hits to 287791 proteins in 4008 species: Archae - 7336; Bacteria - 307356; Metazoa - 10132; Fungi - 7268; Plants - 6380; Viruses - 4; Other Eukaryotes - 43586 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G16340.2

Model type
Protein coding
Short Description
pleiotropic drug resistance 1
Computational Description
pleiotropic drug resistance 1 (PDR1); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), Pleiotropic drug resistance protein PDR (InterPro:IPR005285), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 7 (TAIR:AT1G15210.1).
Link
InterPro Scan - TAIR

AT5G61680.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G69940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61690.1

Model type
Protein coding
Short Description
ABC2 homolog 15
Curator Summary
member of ATH subfamily
Computational Description
ABC2 homolog 15 (ATH15); CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC2 homolog 11 (TAIR:AT5G61730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR