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12-5389-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10923302 [Map]; Strand: w
      • AT4G20220.1 - [+] show detail - Reverse transcriptase (RNA-dependent DNA polymerase)
        Distance: 906; Region: intergenic
      • AT4G20230.1 - [+] show detail - Terpenoid cyclases/Protein prenyltransferases superfamily protein
        Distance: 819; Region: intergenic
    Flanking Genome Sequence: 12-5389-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACTT TAGAGTAAAT 
    GAGATAGGTT TTAAATGGGG TAAGTATAAA TGGAGTGGAT TAGCCCATAT 
    TAACATCACT ATTGAGGAGT GAGGCATTTG TTTTTTATTC TTGTTTTCTC 
    GTACAACTTC CTATGCTTGG TTTCTACTGC CTGCAATTAG ATTCTATGTC 
    TTTTGAATTA GCGAAAAGCT

AT4G20220.1

Model type
Protein coding
Short Description
Reverse transcriptase (RNA-dependent DNA polymerase)
Computational Description
Reverse transcriptase (RNA-dependent DNA polymerase); CONTAINS InterPro DOMAIN/s: Reverse transcriptase, RNA-dependent DNA polymerase (InterPro:IPR013103); Has 55 Blast hits to 55 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20230.1

Model type
Protein coding
Short Description
Terpenoid cyclases/Protein prenyltransferases superfamily protein
Computational Description
Terpenoid cyclases/Protein prenyltransferases superfamily protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT4G20200.1); Has 1640 Blast hits to 1613 proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 1633; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR