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12-5392-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3854304 [Map]; Strand: w
      • AT5G11950.2 - [+] show detail - Putative lysine decarboxylase family protein
        Distance: -612; Region: promoter
      • AT5G11950.1 - [+] show detail - Putative lysine decarboxylase family protein
        Distance: -664; Region: promoter
    Flanking Genome Sequence: 12-5392-1 - 5-prime edge
    GGGATAAACT AAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTA 
    NCAGCNAGTN NCGTNGANCA NGCGTNNCTT NNNAAGNTGA CAAAANAAAN
    GTTGGATATA AAAATACAAA AGGAGANANA TTGGTGTTGG ANAAGGGAAG
    GAGCTGTGGG AGGNTNATGT GGGNTTNNTN TGTTTGCNAT ATAACTAATT
    TANATTTTAT TATATANGTA TGNAATTTTT TGTAACNTAT GGANGTTGTN
    NCTGGATGAT GANNATGGCN TATATGATAA ANAAAGAAAA AAAAANATTT
    GAGGTGAATA ATAAAAAATT TAANGTGTTA AGGTAATTGG GTTGANTNTG
    TGANNAAAAT TGTTTAATGG TTTTAAAAAA AAAAAATNAA NTTTTTNTTT
    AANTTTGGNA TTTTNGGGGA AAAAANNTTN TAANATAGGT TAANTGAAAA
    AAANTANANN TTTTNNAANN TTTTGTTAAT NGTANATTNN GGTAAATAAT
    TTTAAAATAT TTTTTTTTAT NAANTTTNNA GATANNTNAA TTTAANAANN
    ANTATTTNNT TTGATTNGAN GANANAATNT TTNTTNTNTT AATAANTTTT
    ANTTANNTNA ANTTTTTTTA GTTTTNTTTT TTGTGTNANA AACANNNTTT
    AAATNNNAAN NGGGGNTATT TTNNGAANAT NTNANTNTAN AAANNTNTTT
    NNAATTATTT NATTNNGGNA TTTTTNTTNN GGNNTNTNGT TNAGATAGGN
    TNNNGAGGTA TNNNTATNTT TNGATNGGNN TGNGGNGNT

AT5G11950.1

Model type
Protein coding
Short Description
Putative lysine decarboxylase family protein
Curator Summary
Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At2G37210.
Computational Description
Putative lysine decarboxylase family protein; FUNCTIONS IN: protein homodimerization activity; INVOLVED IN: lysine biosynthetic process via diaminopimelate; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: lysine decarboxylase family protein (TAIR:AT2G37210.1); Has 4835 Blast hits to 4834 proteins in 1455 species: Archae - 28; Bacteria - 3320; Metazoa - 8; Fungi - 132; Plants - 375; Viruses - 0; Other Eukaryotes - 972 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G11950.2

Model type
Protein coding
Short Description
Putative lysine decarboxylase family protein
Curator Summary
Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At2G37210.
Computational Description
Putative lysine decarboxylase family protein; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: lysine decarboxylase family protein (TAIR:AT2G37210.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR