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12-5394-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18061615 [Map]; Strand: c
      • AT4G38640.1 - [+] show detail - Plasma-membrane choline transporter family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-5394-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC ATTTGATTTA GCGTCCTGCT TTTGCTCAAA CACTACACTA 
    AGCAGATTGT TTATGCTTGT TTACCTCTCT TTGTCCTTTT TCCCATCTTT 
    TTCAATGTCT ATTGGTTTGT CGCCTGTACT CTTAGCTCTT CTTGTAGCGA 
    TGCCCTCCCT CTAGCTTACA GAATACTTGT CCTAGTCTTT GTTTTCTTGA 
    TCATCGGGAT CATTGTCTGG ATCATAGTAG CTAATTGGCA CAGAATTGAG 
    CTTACTATCC AAATCATCAG TGTTGCATCT GATGCCTTGT CCAAAAATTT 
    GAAACTTTTT GTTGTGCTGC CGCTGCTGAC TCTCGGGTTA GTGGTGTACT 
    ATGCGCCGAT TGTGGTGTTC TTGGTGTTTG CAAGGTTTAA TGGGAAGTTT 
    GTGCCGCGAG AGTTGGATGG TCAGTACTTT TGTGAGTGGA AAGAAGATTC 
    TTGGGTTCCT GCGTATTACG CTCTTGCCAT TTTAACGATG ATCTGGTCTC 
    TTGCTGTAAT GGTGGAAATG CAAGTGTATG TGATAAGTGG AGCTATTGCT 
    CAGTGGTATT TCTCCAAGGA AGACTCAATC CCTAAAAAAT GCATCCGGAG 
    TTCTTTGAGG TGACTCGCTG CCACATCTTN CTCTATTNNA TNCTNGNNAT 
    CAATGAATTT GCTGNGCAGN TTCTNTTACA ATCAATGGGG CTCTNANNNN 
    TAAANANGN

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 18352755 [Map]; Strand: c
      • AT2G44460.1 - [+] show detail - beta glucosidase 28
        Distance: 2789; Region: intergenic
      • AT2G44470.1 - [+] show detail - beta glucosidase 29
        Distance: -1431; Region: intergenic
    Flanking Genome Sequence: 12-5394-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TAACGTAACG ACATTTCAAA 
    AACAAAAACA AATTTGAGGA TAGCGACATT TCAAGTTTCG AGGTATGTAA 
    CGTAAGAGTT CTTTAAAGGA AATGGAAAGT AACGTAACGA TTGCATAGAT 
    TGCGATATAG TATAAGATTC GACTACATCT GTCAACATAT TTATTAGGTC 
    TATCTCTGGC GTTACACATC ACACATGGAG TCTAAAATTA CTTTTATTTA 
    TTTTGTAATA AGAACAAAAT TATAAATGGA TATTAAAACA AGAACTTGAA 
    ATCCAAACAA AAAGTAATAT TGTATACGAT GAGATAATTA ATATGTTATG 
    ATTCTAATGT TTTAAGGAAT ATGGTAAACA AAAAATTCTT AAAAATTCAT 
    TAAAACCTAT GTATATCAGT ATATTTAATT AGTTTTTTCT AAATATAATG 
    ATAATTATAA ATATAGATCG TGTCAAACTA GTTAAAACCC GATAGTCAGA 
    CACTCAAATA CTCATTTGGT TCAACAAATA GGGTACGTAT ATATTTATAA 
    AAAAATCATT TAGTTTATAT ATTGNCTATT ATTTGTGTCT TATTCTTTTT 
    TTTTCAATTT TAATATTACT TCAATGCGTG CCANNTCAAA ATCTTCCTNT 
    NAAAGGATTA CNACTNCNTN CTAAATCNCN NGTNAAANAA TNNNATNNNA 
    AANNNNNNNA TNGGGCTCTT NNNNTNTNCN NNGNNNGNNT NNNATNNCCN 
    NNNNTTANT

AT2G44460.1

Model type
Protein coding
Short Description
beta glucosidase 28
Computational Description
beta glucosidase 28 (BGLU28); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: response to karrikin; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 29 (TAIR:AT2G44470.3); Has 11295 Blast hits to 10946 proteins in 1460 species: Archae - 142; Bacteria - 7777; Metazoa - 711; Fungi - 201; Plants - 1461; Viruses - 0; Other Eukaryotes - 1003 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G44470.1

Model type
Protein coding
Short Description
beta glucosidase 29
Computational Description
beta glucosidase 29 (BGLU29); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 28 (TAIR:AT2G44460.1); Has 10856 Blast hits to 10587 proteins in 1468 species: Archae - 140; Bacteria - 7715; Metazoa - 686; Fungi - 195; Plants - 1406; Viruses - 0; Other Eukaryotes - 714 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38640.1

Model type
Protein coding
Short Description
Plasma-membrane choline transporter family protein
Computational Description
Plasma-membrane choline transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR