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12-5404-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 5029204 [Map]; Strand: c
      • AT5G15490.1 - [+] show detail - UDP-glucose 6-dehydrogenase family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-5404-1 - 5-prime edge 
    GGTCCAACCA TGGCTGTCAT TGCTCTAAAG TGTCCATCTG TTGAAGTAGC 
    TGTTGTTGAT ATCTCTGTGC CAAGGATCAA TGCCTGGAAC AGTGATCAGT 
    TACCGATCTA TGAGCCTGGT CTTGATGATG TCGTTAAGCA GTGCCGTGGA 
    AAGAATCTCT TCTTCAGCAC CGATGTTGAG AAACATGTGA GAGAGGCTGA 
    CATTGTTTTT GTGTCTGTCA ACACCCCTAC TAAGACCCGT GGTCTTGGAG 
    CTGGCAAAGC TGCGGATTTG ACTTACTGGG AGAGCGCTGC TCGTATGATT 
    GCCGATGTTT CGGTTTCCGA CAAGATTGTT GTTGAGAAAT CAACTGTTCC 
    TGTCAAAACC GCAGAGGCAA TTGAGAAGAT TCTTACACAC AACAGCAAAG 
    GAATCAAATT CCAGATTCTG TCAAACCCTG AGTTCCTTGC TGAAGGAACC 
    GCTATTGAAG ACCTTTTCAT GCCTGACCGT GTCCTCATCG GTGGTCGTGA 
    AACAACTGAA GGCTTTGCAG CCGTCAAAGC CTTGAAAGAC ATTTATGCCC 
    AATGGGTCCC TGAAGAGAGA ATCCTCACCA CCAANNNNTG GNNTGNCNAN 
    CTTTNCANCT NNNNNNNNG

AT5G15490.1

Model type
Protein coding
Short Description
UDP-glucose 6-dehydrogenase family protein
Computational Description
UDP-glucose 6-dehydrogenase family protein; FUNCTIONS IN: in 7 functions; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cytosol, cell wall, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucose/GDP-mannose dehydrogenase, N-terminal (InterPro:IPR001732), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), UDP-glucose/GDP-mannose dehydrogenase, dimerisation and substrate-binding domain (InterPro:IPR014028), UDP-glucose/GDP-mannose dehydrogenase, C-terminal (InterPro:IPR014027), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose/GDP-mannose dehydrogenase, dimerisation (InterPro:IPR014026), Nucleotide sugar dehydrogenase (InterPro:IPR017476); BEST Arabidopsis thaliana protein match is: UDP-glucose 6-dehydrogenase family protein (TAIR:AT3G29360.2); Has 13373 Blast hits to 13344 proteins in 2170 species: Archae - 309; Bacteria - 7111; Metazoa - 214; Fungi - 99; Plants - 213; Viruses - 14; Other Eukaryotes - 5413 (source: NCBI BLink).
Link
InterPro Scan - TAIR