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Mutant Lines
12-5413-1

12-5413-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 23996922 [Map]; Strand: c
- AT5G59540.2 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
  Distance: 0; Region: exon2 (CDS)
- AT5G59540.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
  Distance: 0; Region: exon2 (CDS)

GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCTTT GAGCATGTGT TGAGTTTCGG TGGTTTACTA 
TTTGAGCTTC TCTCAGAAGC ACTTGGTTTG AAATCTCAGA CCCTTGAGAG 
CATGGATTGC GTGAAGACTT TGCTTATGAT CTGCCATTAT TACCCACCTT 
GTCCACAACC TGACCTAACG TTAGGGATAA CGAAACACTC AGATAACTCC 
TTCCTCACGC TTCTTCTCCA AGACAACATT GGTGGTCTTC AAATTCTTCA 
TCAAGACTCT TGGGTTGATG TCTCTCCTAT CCATGGAGCT CTTGTCGTCA 
ACATTGGAGA TTTTTTGCAG GTAAAGTAAC AATCTGTAGA ACCAAATACC 
TTAAACTTAA ATATCTTGTT TAAATAATTT TAGGTTTGAT TTGATGCAGC 
TGATAACGAA CGATAAGTTT GTAAGTGTGG AGCATAGAGT GCTTGCAAAT 
AGACAAGGAC CAAGGATTTC AGTAGCTAGC TTTTTCAGCT CAAGTATGCG 
TCCAAATTCC AGAGTTTACG GACCGATGAA AGAGCTTGTG TCTGAAGAAA 
ACCCTCCAAA ATACAGAGAC ATAACCATAA AAGAGTATTC AAAAATATTT 
TTTGAGAAAG GTCTCGATGG AACGTCNCAT CTCTCGAATA TCAGGATNTG 
AAAAACGAAA ACGACAGAAA TTNGCATCTC TCGAATATCA GGATNTGAAA 
AACGAAA

3 prime edge [+] show sequence

Chromosome: 5; Position: 23996923 [Map]; Strand: c
- AT5G59540.2 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
  Distance: 0; Region: exon2 (CDS)
- AT5G59540.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
  Distance: 0; Region: exon2 (CDS)

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
TTTTGAGTAT TCAAACATAG CATCCCTGAG TCAATAAACA ATTTAGAAAT 
CTATTAAACG ACCTAATTAA GTTGTTAACT AATCTCACTT CTAAGTTTTT 
AAGAAAAAGT TAAAGAATAT TCCCGTTACC TGCAAGTCTC AGGGATCTCC 
TCAGGAGCNT GGAGGATCTG GAGCTATGTA ACAAGAGAAA GAATCTCTCC 
AATTAACAGA CGGCGAAGAA CTGTATAGAT CGAAGTTACN TGTTGTATAC 
AAATTTTTTG TTGCCGGCAT CACGCGAGAA GAATGATTTC TTGACCTCAG 
GATCTTCCTC GTGAAACCTA CGAACCCCAT CTTTAATCTC TTCAAGAACG 
TTTAAAGGAA TACTATGATT GATAACCTGG AAGAATCCCC AATTCTCCAC 
CGCATATTTG ACTTTCTCTA CGATGGCTTC ACGTGAGGCT GTGTCCGCGT 
GGACGCTTGC AAAGTCGATG ATAGGGATCT CTAGGTCTGA TACTGAAGCA 
NAAGGTTTCT TGTTGGTTAA GATATCTTGA CGGTGGTGGA AGATACGAGG 
AACTTCAGTG ATTTTANCGT CNACNANGCC TTTCCACCTT GTTTTGTTTN 
NTNNAAAGCT NNNNNCNNGG CCNNNNACCN CCNT

AT5G59540.1

Model type: Protein coding
Short Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G59530.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G59540.2

Model type: Protein coding
Short Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G59530.1); Has 7263 Blast hits to 7229 proteins in 962 species: Archae - 0; Bacteria - 1031; Metazoa - 70; Fungi - 654; Plants - 4685; Viruses - 0; Other Eukaryotes - 823 (source: NCBI BLink).
Link: InterPro Scan - TAIR