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12-5437-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17287905 [Map]; Strand: w
      • AT4G36660.1 - [+] show detail - Protein of unknown function (DUF1195)
        Distance: -476; Region: promoter
      • AT4G36670.1 - [+] show detail - Major facilitator superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-5437-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TTTGCGGTGA ACAGAGTAAT GAACGCCACC GTGTCGATGT CGTTTTTGTC 
    GTTGACTAGT GCGATAACCA CCGGTGGAGC TTTCTTTATG TTCGCCGGAG 
    TTGCGGCAGT GGCGTGGAAT TTCTTCTTCT TCCTCTTGCC GGAGACGAAA 
    GGAAAATCAC TTGAAGAAAT CGAAGCGCTT TTTCAAAGAG ACGGTGATAA 
    AGTACGCGGC GAAAACGGTG CAGCTTAGCA TGATGAATAT AATGTTATCA 
    TTAAATGAAA CGACAGCGTT TGGGGTTTCT CACTCATTAC ACGACGTCGT 
    TTAGTTGTAC TTTTGTGTGG CTTTTATCAA ATTATAAATC AACGGTCAAG 
    ATTGACGCAC GCTTTAGTAT TTTTTTCATT AACAATTTAA GATCAACGGC 
    TAATACATCG CCAATTACTA GCTAATAATG GCCCAGTAGT GTGAACTGTG 
    AAGAGAGTGA ACTGATTTTT TTTTTTAAAG TTNTNTNTCA AATTTAACAA 
    AATCNANCCG ACCNTTTCCC ANTTGAACTG AATNTACTGA AATCNATTCA 
    CAAAAGCNCA AATTNGGGGT TAGCNTCNCT CNCTAANCAA NATTATNGAG 
    TNGNAATTAN TTTTTGNNAT CNNNANNANN GNGGACAATN CTTTGNCNAN 
    NANAANNANN ANTGGNNCGG NNANGGGNAN ANNTTTGGNN ANTTNCCNNC 
    CCGGNCCGNC NC

AT4G36660.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1195)
Computational Description
Protein of unknown function (DUF1195); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1195 (InterPro:IPR010608); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1195) (TAIR:AT5G65650.1); Has 67 Blast hits to 67 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G36670.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G18480.1); Has 44203 Blast hits to 43606 proteins in 2595 species: Archae - 767; Bacteria - 24504; Metazoa - 5461; Fungi - 8681; Plants - 2771; Viruses - 2; Other Eukaryotes - 2017 (source: NCBI BLink).
Link
InterPro Scan - TAIR