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12-5444-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5468406 [Map]; Strand: c
      • AT4G08593.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -939; Region: promoter
    Flanking Genome Sequence: 12-5444-1 - 5-prime edge 
    CCTATGACAA ATATGTTACA CAACCATTCA AGATATTAAA GTTTTAGAAA 
    AATCTGGGAA GACTACATAC AACAAATCCT TCGTGAAATA TAAATCTGCG 
    AGATAATATA AATCTTTCAA ACTATATCAA AAAAAGTTGG TGGTACAAAA 
    AAGTCTATCG AACAAAATTT GTGGTCCAAA ATATATCTGT CGCCAACAGG 
    TCAAATTTAA CAAAATCGAC AAAAGAATGG AGTGACAGTA TCGTAAATAA 
    ATTTTGATTT TTTCGAAAAT AAATAGTTTT TATTAACGGC ATACATGTAA 
    TACTGTCTTT TCCTACAAAG CAAAACAATG ACATTTTAGA CATAACTTAC 
    AGTAATTTTT CAACTTAAAA CCCAAAATAG AACTATACTT GGGGAAAGGA 
    GAGTTAATTC ATCTAAACTG GTGTTTTGTT TTTGTTTTTT GGTTCAGCCG 
    CTTACTCAAC TGATGGATAT GGTTTGCCCC TCTTTAAAGG TGTTGTTTCT 
    GTCGGATATC CCAAGTTTGG NGGAACTTCC TCCTTCATTT AAGAAGTTCC 
    ATAAACTAAT GTATTTGGAA ATTTCAAACT GCATAAATCT GGAGACTCTT 
    CCAACAGACA TCAACTTTGA GTCTATCGGT GCCCTGGATC TTAGTGGATG 
    CTCACGGTTA ANAAGTTTTC CTAGTACCTN AAGATTCTCA ACC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 15327869 [Map]; Strand: c
      • AT5G38350.1 - [+] show detail - Disease resistance protein (NBS-LRR class) family
        Distance: -790; Region: promoter
    Flanking Genome Sequence: 12-5444-1 - 3-prime edge 
    GTCATAGGTT TGTTTTGCAA TTGCAGATTT TTTTATTGTA TTGCCAACTC 
    ATTTTTTTAT TTAAACAAAA AAATTCTGTT TAATAACAAA AATTTTAACC 
    AAAAAGTGAT ATCTAATGAA GACATATTTG TTTTGTGTAA TCATAGACTT 
    TATAAACTTG TCAATAAATT CTTGCATTTT ACGGCATATT TTTGTAAAAA 
    TAAAAAATTA CTAAACAGTC ACATAGTGAT AACAGATTTG TTTTTAGTTA 
    TGACATTTTT GTTTTAAGAT AAAAAAATAA TAGATTTTCA TATCATGTTA 
    TACCCGATTT TTTTGTGACA AGAACAACTT TTTTAGTGAT GATAGACTTT 
    TTATTGGCAN ATTTGTTTTC AAAATTTCNA TACATCTAGT TACATAANAC 
    TTATTATATA GCCTCAAGTA AAACCAAAGT TTGACACAAC TCCAAATTTT 
    ATTGGTTTGA TTGTATGTTT AAACCGGTTT CATTACACTT AGTTACAACA 
    NACTTTTACT CGTTTTGACA NATTTGTTTG ATTTGTTTTT TTAGGGGAAA 
    TTTTATTAAA ACGTGATTAN AGGTTAATTA GTCTTTTTCA CAAAATTTGG 
    GTTATTATAG TTCTTGACTT GGATTAGGAG TCATTTAAGT TATTTNTGCT 
    AAAATTTGAG TCAATCTANA CAAATCTATT TAAAATTTAT GTNTNTCATG 
    ATNTGAGN

AT4G08593.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45095.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G38350.1

Model type
Protein coding
Short Description
Disease resistance protein (NBS-LRR class) family
Computational Description
Disease resistance protein (NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G38340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR