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12-5449-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21691341 [Map]; Strand: w
      • AT1G58390.1 - [+] show detail - Disease resistance protein (CC-NBS-LRR class) family
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 12-5449-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAA GCCACACTCA CTTAGCTTTA CGAATGTTAG 
    TCGAGAAGGG AAGTGTTGTT GCCTTGGCAT ATATAAGTCC AACAATAGAT 
    GTTTGAGATG AATGAAATCC AGTACAATAC CCTCTTCTCT CATTTTCTTA 
    GAGTGAGTAC CCACAATATA AAGATATTCA AGGTTTCTCA GTCCACTTAT 
    CGATGCCGAT AGAGTTTCTG TACTCGTCTC ACGAGTTAAA CTGATAGCAA 
    GAGTCATCAA TCTGGTCATA CCACATAGAT CCTTTGAGCT ACTATGCCAT 
    GTTGAGAAAT AAACCAAGGT CTCCAACTTT ACTAGATTTC TCAAACTCAA 
    CCTTGTCTTC TTGTGCATAT AGAACGGTAA TTTAAGATAT CGCAATTCAT 
    GCATCCTCAT GAAGACATCC GGCACAAATA TATATTCCGT ATCTACATCT 
    AAATTTAGAT AGATCAATAA CATTAGGTTT CCTAGAGAAG AAGGTAGACG 
    AGATACCTTA GCATCTTGTA AGCTCAAGTA TCGTAAGTGG ATGAGGTTTC 
    CAATGCCAGA ANGNAGCTTC ATTCCTTCAA AATCTACNTA AAAGANATCT 
    AACACTCTGA NAAGTTTTAA CCTTGTNAAG NTNNANNNNG GGCCGNCNNC 
    CCCNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22396877 [Map]; Strand: c
    Flanking Genome Sequence: 12-5449-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
    ACGCGTTATC GTCGTGAACA ACATCCGGAT TCGGGTTAAG AATATATGTA 
    TGATATGATA TGTCTAAACC ATTTTCTATA AACTATGAAT TTTTTTATTA 
    TTATTGATGT GATATTGTAT ATCGTCATAC CAGTCAAAAT TTAATTATTG 
    TAAGATACNT TTTGTTTTAT TTTGTAACCT GGAATTATTT TTTTTATATA 
    TACTAATAAA TTAATATGTT

AT1G58390.1

Model type
Protein coding
Short Description
Disease resistance protein (CC-NBS-LRR class) family
Computational Description
Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: defense response, apoptosis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, LP.08 eight leaves visible, D bilateral stage; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G58400.1); Has 14341 Blast hits to 13745 proteins in 491 species: Archae - 4; Bacteria - 531; Metazoa - 280; Fungi - 132; Plants - 13314; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G60835.1

Model type
Pseudogene
Curator Summary
Encodes a Rapid ALkalinization Factor (RALF) family protein [pseudogene]
Link
InterPro Scan - TAIR