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12-5451-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 624746 [Map]; Strand: w
      • AT4G01460.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 1801; Region: intergenic
      • AT4G01470.1 - [+] show detail - tonoplast intrinsic protein 1;3
        Distance: 346; Region: intergenic
    Flanking Genome Sequence: 12-5451-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCT ACAACCAACC ATATATATAT CTTCATAGTA 
    TTATTGATAA TGGCGGGTCC CATTATGTTT GATATATTTT CAGTTTTCAC 
    CATGGAAGCA TAATCTCAAG AATATGCCTC CAATAAAATT CGTTTGTACA 
    TGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 624753 [Map]; Strand: w
      • AT4G01460.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
        Distance: 1808; Region: intergenic
      • AT4G01470.1 - [+] show detail - tonoplast intrinsic protein 1;3
        Distance: 339; Region: intergenic
    Flanking Genome Sequence: 12-5451-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGGTTGGTTG GTCCATGCAC GTTCTTTATT TTATTTTTGG CCCAAGCACG 
    TTCTGATATG TGAATCTTAG GCTAATGATT TTTTAGTCGA TTTAAGTATT 
    GAACAACACA CACAAAAAAA GGAATT

AT4G01460.1

Model type
Protein coding
Short Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Computational Description
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G61950.1); Has 1536 Blast hits to 1519 proteins in 127 species: Archae - 0; Bacteria - 0; Metazoa - 22; Fungi - 44; Plants - 1468; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G01470.1

Model type
Protein coding
Short Description
tonoplast intrinsic protein 1;3
Curator Summary
Encodes AtTIP1;3, functions as water and urea channels in pollen.
Computational Description
tonoplast intrinsic protein 1;3 (TIP1;3); FUNCTIONS IN: water channel activity, urea transmembrane transporter activity; INVOLVED IN: transport, urea transport, water transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: gamma tonoplast intrinsic protein (TAIR:AT2G36830.1); Has 10761 Blast hits to 10728 proteins in 2135 species: Archae - 83; Bacteria - 5069; Metazoa - 1488; Fungi - 435; Plants - 2488; Viruses - 0; Other Eukaryotes - 1198 (source: NCBI BLink).
Link
InterPro Scan - TAIR