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12-5474-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 572954 [Map]; Strand: w
      • AT3G02660.1 - [+] show detail - Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
        Distance: -609; Region: promoter
    Flanking Genome Sequence: 12-5474-1 - 3-prime edge
    TGTATATATG TAAAAGTACA GCCGGTTTCG AAGTCAAAAT TGGTATTGAA 
    AAAATGTAAG ATAAAATAAT TAGTAAAAAT TAGATATATT CTTGTTTCTT
    ATTTTGTGTG TATATATAAT CAGAATTTTA GGAATATAAG GATATAAAAC
    AATAAATATG AAATGTGAAT GTTAAAAAGG AATATGTAAA TATGTAATCA
    TAAAGCTGGT TCTGATTTTT ATATATAATT AGTCAAATAT ATGAGCTGTA
    TGCATGCCTA TTGTATATAA ATTAGTCAAA GTTTCAAGTA TAGATTATTT
    TCCTTTTTCA ACCAATTTTT ATGTCATATT TGAAATTGTA CATGCATTTG
    TAGTTTTAAA ATCAGTCTAC TTATATAGCT ATATATTCGA ATT

AT3G02660.1

Model type
Protein coding
Short Description
Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial
Computational Description
EMBRYO DEFECTIVE 2768 (emb2768); FUNCTIONS IN: RNA binding, tyrosine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: tRNA aminoacylation for protein translation, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class I, conserved site (InterPro:IPR001412), Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (InterPro:IPR002307), RNA-binding S4 (InterPro:IPR002942), Aminoacyl-tRNA synthetase, class Ib (InterPro:IPR002305); Has 9022 Blast hits to 9013 proteins in 2715 species: Archae - 16; Bacteria - 5542; Metazoa - 116; Fungi - 145; Plants - 38; Viruses - 0; Other Eukaryotes - 3165 (source: NCBI BLink).
Link
InterPro Scan - TAIR