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Mutant Lines
12-5540-1

12-5540-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 22868746 [Map]; Strand: w
  - AT1G61890.1 - [+] show detail - MATE efflux family protein
    Distance: 0; Region: exon4 (CDS)
Flanking Genome Sequence: 12-5540-1 - 3-prime edge
```
GTCCANCANA GGCTGAAGCC GNTGCGGATT TATCNNCCTT TTTAGCCATC 
ACAATTGTCC TCCATGGAAT T
```

5 prime edge [+] show sequence

Chromosome: 1; Position: 29518398 [Map]; Strand: c
- AT1G78450.1 - [+] show detail - SOUL heme-binding family protein
  Distance: -465; Region: promoter
- AT1G78460.1 - [+] show detail - SOUL heme-binding family protein
  Distance: 0; Region: exon2 (3UTR)

ACTGTAACAG CAGCTTGCAG CTTCTGGTTT AACCGGTATA AATTGTATCT 
CTGGTTAAGT GGTGATTAAT ATTGTTATTT TGTAAAGGTG GGAAAAACTA 
TAACCAAAAA GTTTGATAAA AAGATAAAAA ATAATAACTA AAATTATCGT 
ATCAAAATTT TCTAGAACAC TTATAAAGCA AAACCTAAAT TTCGTCGAAT 
CAAACAAATT GTAAATGATT TTTCAGTTTC GCTTTCTAGA ACACTTATAT 
AAAGCTGTAA AGAAAGCACC TGATCAAAAC CATGAAAAAA AAANGTAAAA 
AAAAAAANTN AANNNNANNT TTTTNNTATT TNGGGGGNTT TNNTNAAGNC 
NNNTNNTTTT NGGGGNCCNN CNAGTNNNTT TAAANCGGGG GNTNNAANGG 
CANTTAANNC CTTNCCNAAA ANNANCCCCC CCCTTAAANC CTTTTTNNTT 
NNAAAAAAAA AAAGNTTTTT TTTTTTTAAA AANGGNAAAA ANCNTTTTNN 
AANTTANCNN GGGGGGGCCC CNNGGGAAAA AAANCCCCCN ANGGGNGGGG 
GNTTNAAANT TTTNAAACCN TNNNTTNTTT TNANCCTTTT TTNNGGGGGG 
NNAAAACNTT TTNANNNNNN GNCNCCNANT TTTNNCCCCC CCCNGGGNNC 
CNNNTTTTNN NGGGGNCCCC CCCCNGGNAN GGGNNNNAAA NTNNNNNCNC 
N

AT1G61890.1

Model type: Protein coding
Short Description: MATE efflux family protein
Computational Description: MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: response to karrikin; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G11670.1); Has 9516 Blast hits to 9487 proteins in 1915 species: Archae - 228; Bacteria - 6498; Metazoa - 145; Fungi - 328; Plants - 1371; Viruses - 0; Other Eukaryotes - 946 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G78450.1

Model type: Protein coding
Short Description: SOUL heme-binding family protein
Computational Description: SOUL heme-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT1G17100.1); Has 640 Blast hits to 629 proteins in 68 species: Archae - 2; Bacteria - 20; Metazoa - 147; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 347 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G78460.1

Model type: Protein coding
Short Description: SOUL heme-binding family protein
Computational Description: SOUL heme-binding family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SOUL haem-binding protein (InterPro:IPR006917); BEST Arabidopsis thaliana protein match is: SOUL heme-binding family protein (TAIR:AT1G17100.1); Has 1017 Blast hits to 990 proteins in 102 species: Archae - 6; Bacteria - 81; Metazoa - 199; Fungi - 0; Plants - 147; Viruses - 0; Other Eukaryotes - 584 (source: NCBI BLink).
Link: InterPro Scan - TAIR