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12-5549-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15981594 [Map]; Strand: w
      • AT2G38130.1 - [+] show detail - Acyl-CoA N-acyltransferases (NAT) superfamily protein
        Distance: -845; Region: promoter
      • AT2G38130.2 - [+] show detail - Acyl-CoA N-acyltransferases (NAT) superfamily protein
        Distance: -879; Region: promoter
      • AT2G38140.1 - [+] show detail - plastid-specific ribosomal protein 4
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 12-5549-1 - 5-prime edge 
    GATGCTACGA CTCTTTTGTT GTTAAAAACA TCTCCAAAGT TATCATCTTT 
    TTATGAAAAG TTTGCATTCT TTATGAATCA TTGAGTCTTT TACATTGAAA 
    AAGTAAAGCA AAACGAAGAA ACNGAGAATC TATATACNTT AGATCAGAAT 
    CTGATGGATG AATCTTCTGT CTCTGTTTGG ATCTTTAAGT GTGAGAGTTG 
    TGGNTGAATT GTTATTTCCC GGCNAGGACC TGTTGCCAGG NGGAGTGGAG 
    NATNNCNNNN NNNANNCNNN NNNNNTCNCN CNCCNGNNNN NCGCNCGCNC 
    ANCNNNGTGN NNANAAANNA NCANTNNTNA NAGAGAGNNG TTNNNNGTTN 
    NGTNTNNCTT NGGTGNNNNN NGNGTCNTCT TTNANNCNNT NCNGGNANGN 
    GAACCCNAAN NNTGCNNNGG ATGNTNTNNN NNTNGNNTTG NGGTTGGGTC 
    GCNCAGGANN NTTNTGNGTN NNNGNTNNGN NGATGGANNG NNGGNNNGNN 
    ANTNCAGNNG NCNTNCNTTT NTNGTGTANN NANANGNTNT GNACNNNTAC 
    NGGANNTTGN NNNGNANGNT NNNGANNNAT NGCCNNCNNN CTNATNNNCG 
    ATNNNGAGTG ANAANGNNCN AANNNCCNCN NNTNNTCCTN NACGCGCGNC 
    GNNNCCTCCT ANCANCANNT CNCNCNGGCT TNNCNACCNN ANNNTNNTTT 
    ANTTNCNGNN AGANGACCNT TCCCCGNNTA NCGTCNNNTC CCTNNTCGN

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 15981476 [Map]; Strand: w
      • AT2G38130.1 - [+] show detail - Acyl-CoA N-acyltransferases (NAT) superfamily protein
        Distance: -727; Region: promoter
      • AT2G38130.2 - [+] show detail - Acyl-CoA N-acyltransferases (NAT) superfamily protein
        Distance: -761; Region: promoter
      • AT2G38140.1 - [+] show detail - plastid-specific ribosomal protein 4
        Distance: 0; Region: exon3 (3UTR)
    Flanking Genome Sequence: 12-5549-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTG AGAGACAACA 
    AGTGAAGAAT CTCATATTTC TAATTAGAGA AGAGAGACTC GTCGATATCG 
    ATTTTGATCT TCTCGTCGTT CTCAAACTTA TCTTTCCTCG GTGGTGCTGG 
    AGGAACCGGT ACTCTCTCCG GTCCTCTTCC TTTGCTCTTG TTTCTTGGCC 
    TCGCCTGCTT ACATAAACCC CAAATTCAAA ACCAAAATTG CGAATTTGCA 
    AAGTAAAATT ACGAAATCGG AAAGAGAAAT TTGACTACTT ACATTCCCAA 
    AAGAGTGATT GAAACGCTTT CCTTTAGCTG TTTTACGGTC ACCTCTACCA 
    CAGTACACTG CGAACAACGG GAAAGTTACG CCATTGACGA ATTAAGAGAG 
    AGCATTGGGA ATGAGAGAGA GAGAGAGAGA GAGAGNGGTT NCCTAGNGGA 
    ATNGNGCTGG GNGAGGAAGT GGAGAGAGAG ANTTGNTGAG TGANGCNAGA 
    GAGAGANACC CCGGNGGTTN CAGAGNGANA ANATGATCNC CGAGNGGAGG 
    GTNACGCGAN TGNGACTCGC GGGNGAGCNC CGAGTATNAG CGACNCCNTC 
    NGCGTGTGTG TTTTNAAATT TGNNCGNGGA AGANGANGAA GATAGGGCTC 
    TGAGAGTANA ACACACGATT NNGNGAGGGG CTTTTAATTA TCTTTTNAAT 
    ATGGGGGGCT NTAATTNAAG GGGGGNTTNT TAGANCNCCC AAATCTATCT 
    ACC

AT2G38130.1

Model type
Protein coding
Short Description
Acyl-CoA N-acyltransferases (NAT) superfamily protein
Curator Summary
Encodes the Arabidopsis homolog of the yeast protein MAK3, a component of the N-terminal acetyltransferase complex C. In mutant plants, synthesis of plastome-encoded photosystem II core proteins D1 and CP47 is affected resulting in fewer thylakoid multiprotein complexes.
Computational Description
ATMAK3; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferases (NAT) superfamily protein (TAIR:AT5G13780.1); Has 3613 Blast hits to 3609 proteins in 1331 species: Archae - 279; Bacteria - 1857; Metazoa - 641; Fungi - 294; Plants - 213; Viruses - 0; Other Eukaryotes - 329 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G38130.2

Model type
Protein coding
Short Description
Acyl-CoA N-acyltransferases (NAT) superfamily protein
Curator Summary
Encodes the Arabidopsis homolog of the yeast protein MAK3, a component of the N-terminal acetyltransferase complex C. In mutant plants, synthesis of plastome-encoded photosystem II core proteins D1 and CP47 is affected resulting in fewer thylakoid multiprotein complexes.
Computational Description
ATMAK3; FUNCTIONS IN: N-acetyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GCN5-related N-acetyltransferase, C-terminal (InterPro:IPR022610), GCN5-related N-acetyltransferase (InterPro:IPR000182), Acyl-CoA N-acyltransferase (InterPro:IPR016181); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferases (NAT) superfamily protein (TAIR:AT5G13780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G38140.1

Model type
Protein coding
Short Description
plastid-specific ribosomal protein 4
Curator Summary
plastid-specific ribosomal protein 4 (PSRP4) mRNA, complete
Computational Description
plastid-specific ribosomal protein 4 (PSRP4); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 87 Blast hits to 87 proteins in 23 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR