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12-5560-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 373092 [Map]; Strand: w
      • AT3G02110.1 - [+] show detail - serine carboxypeptidase-like 25
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 12-5560-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTT AGGCTAAGTA GGCCAAACCA AAATAAAGTA 
    AATTAGAAAG ATATAAACAA AATAGATAAA TAAGTCCAGT TTCATGGATA 
    AAGAGTGGTT TATAAATAAG TATTAAATAA AAACATTTAC TTGCAAACCC 
    ATACAAGAAG TGTGACAGAG ATTAGTTGGT TAGCTAAAAT AGATCTAGCG 
    AAATTATAAT GTTGTTAGGT AAATAATTCA GTTTCCAAAA AAAAGCTAAT 
    AGTAACCACA AAGAATGTAT AAAAAGAAAA CAAATGGTNG GTAAAAATTA 
    ACCTCCGTTG AGCCAAATTA CAANAGGTTT GGAGAGAGGG AGGTCAAAAG 
    CT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 1258730 [Map]; Strand: c
      • AT3G04630.2 - [+] show detail - WVD2-like 1
        Distance: 0; Region: exon1 (5UTR)
      • AT3G04630.1 - [+] show detail - WVD2-like 1
        Distance: 0; Region: exon1 (5UTR)
      • AT3G04630.3 - [+] show detail - WVD2-like 1
        Distance: -68; Region: promoter
    Flanking Genome Sequence: 12-5560-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG AGGTGGTGCT 
    GCACAAGAAT CCTTCCTCCT ATATCCTACA AGACTTGTAA GAAACAATTT 
    TTGTTTTGCA TTTTGGTTGA AACATTTATC TTCTGTTTTT TGGGTACCTG 
    CTCTTCCTTA AATCCTTGTT CTATCTGTAA AAATTGCTCT CAAAGTTTTC 
    AAATTTATTC GTTATTCTTA CTATTTATTG CCCATCTGGA TTTTTAAATT 
    TTGAAAATTT GACTCTTTCT TCATTTGGTT GTTTATGCGT GTTGGTTTCA 
    CTTTTGAATT GTTCTTCTGT GGCCCTTTCT ACAGATTCAA GAATGTTTCT 
    AACTTTGAAC CAATCTCTGT TCATTACGTT CCAATTTTGA AATGTCAGAT 
    GAAAAAAGAG TTGTGAACTT TTAGAAGATT ATATTTTGTT ATCGCTAGGG 
    TATAGAGAAA GCTGAGATTT TACAAATTGA AATGGGTCTT TGAGAATCTT 
    TGTAACAGAG AATCTGTTTG TTTTGTCTTT GGTTGGTGGA TATGTCCAGT 
    GGAATGGGAA GAGAAGTTGT TGAGGTGCTT ATGGACCGAA ACGCCGACGT 
    TTCAAACGGT AGAGTTCATG TTGCTCCTAA GATAGCTGCA GAGGAGACTG 
    ATGAGGAATT TGAAGTCAAA GAATGCACAG AGGAGAAGTC TCTTTCTGAG 
    AATGCACCAA ATGTTGGATC TGCTGAGAGA GTTGGAGCTC ANAAATCACC 
    TAAAACCCN

AT3G02110.1

Model type
Protein coding
Short Description
serine carboxypeptidase-like 25
Computational Description
serine carboxypeptidase-like 25 (scpl25); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G30610.1); Has 3637 Blast hits to 3574 proteins in 364 species: Archae - 0; Bacteria - 191; Metazoa - 636; Fungi - 868; Plants - 1530; Viruses - 0; Other Eukaryotes - 412 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G04630.1

Model type
Protein coding
Short Description
WVD2-like 1
Curator Summary
Member of a small gene family which have a KLEEK domain which may be involved in protein- protein interactions. Over expression of WDL1 results in abnormal root development.
Computational Description
WVD2-like 1 (WDL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: circumnutation, root morphogenesis; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT5G28646.2); Has 555 Blast hits to 553 proteins in 81 species: Archae - 0; Bacteria - 12; Metazoa - 128; Fungi - 23; Plants - 316; Viruses - 4; Other Eukaryotes - 72 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G04630.2

Model type
Protein coding
Short Description
WVD2-like 1
Curator Summary
Member of a small gene family which have a KLEEK domain which may be involved in protein- protein interactions. Over expression of WDL1 results in abnormal root development.
Computational Description
WVD2-like 1 (WDL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: circumnutation, root morphogenesis; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT5G28646.2); Has 563 Blast hits to 554 proteins in 86 species: Archae - 0; Bacteria - 24; Metazoa - 128; Fungi - 18; Plants - 315; Viruses - 4; Other Eukaryotes - 74 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G04630.3

Model type
Protein coding
Short Description
WVD2-like 1
Curator Summary
Member of a small gene family which have a KLEEK domain which may be involved in protein- protein interactions. Over expression of WDL1 results in abnormal root development.
Computational Description
WVD2-like 1 (WDL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: circumnutation, root morphogenesis; LOCATED IN: cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT5G28646.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR