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12-5598-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 33801 [Map]; Strand: w
      • AT4G00085.1 - [+] show detail - pre-tRNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT4G00090.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -290; Region: promoter
    Flanking Genome Sequence: 12-5598-1 - 5-prime edge 
    AAAACAAGCA AGAAAATACC TTTGCCGTAT ACAAAGATTA TTAGCATTAT 
    TATCGACATC ACAGAATGTA GCCCGNNNNG CTCACNNGGC ANACCGCANG 
    GCTCTTAACC TTGTGGTCGT GGGTTCGAGC CCCACGGTGG GCGATAGTGT 
    TTTTTCTGTT GTTTTTGTAA AGAGCTGAAG TTATAAATGG GCTTTGAAAT 
    TAATGGGTTC GAACACCAAC GGTGGGCCTT TTTTTCTTTC TATTTTTGTA 
    AAGAGCTGAA TTTTAAAATG GGCTTTGAAA TTAATGGATC AGTGAGGTTA 
    AGGCCCATAT TTCTAATAAA ATTAGAAGTA GTTACAAACC CGACCCGACC 
    CGGTTACGTG TATGCGGAGA TCACTCTCCT CTCCATAAGC TAAGCTCTAG 
    AAACACCGCC TTTAACGTCT CGCTGCACCA TTTTTCATCG TTGATCAGTC 
    GTCGATCCTC TTGAGTGATT TTGATTTTAN ACTTTCTAGT TATCAAACTC 
    GAAAGATGGA TTCTGTCCTT GTANNGGGCA TNGCANTCGG TTATTCTCGN 
    GTGCGTGATC GCGTGTACTC TTNTTCNGTG CTACTTCCGG AAGCGGACAT 
    NGGAGGNGNA ATCCATNGGC CAAAAGCGGA GCCTNANGGA TCACCAGCCC 
    AGGGCCCGNA AACCACGCGN NCCCCTTTAA ATNNNGANNA GNCNGNNGAA 
    NGNGNGN

AT4G00085.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Lys (anticodon: CTT)
Link
InterPro Scan - TAIR

AT4G00090.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
Link
InterPro Scan - TAIR