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13-0010-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 426894 [Map]; Strand: c
      • AT2G01920.1 - [+] show detail - ENTH/VHS/GAT family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-0010-1 - 5-prime edge 
    CTATTAGAGC GCTCCTCGCT GGTCACCAAA TCCACCATAT CCGCCGCGGT 
    TACCGGCGTT ACTTTTGCGG CTTTCCGATC TAACTCGGGG GCGATATGGA 
    GAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 427010 [Map]; Strand: c
      • AT2G01920.1 - [+] show detail - ENTH/VHS/GAT family protein
        Distance: 20; Region: intergenic
      • AT2G01930.2 - [+] show detail - basic pentacysteine1
        Distance: 107; Region: intergenic
    Flanking Genome Sequence: 13-0010-1 - 3-prime edge 
    TCTAATAGTC CATCAGATTT TCTTACCTTC TAATCACGTA ATTAGTAGCC 
    TAATCATGTT ATAGTCTAAC GTTGTTTGTA CATCTGTGTA TGTTAATGTG 
    ATAGATAAGT TAAAAATGCA AATAAACAAC CCTTTGAACA TCNTTATAAA 
    AAGATTTTCT TCTTCATTTA AAATTGGTTA ACATAACAAC ATTTTTTATC 
    AAAACACCAT CTTAATGTTT CCAGGTCAAC ATTTCCAAAC CCTAAAGCCG 
    GAANGAAANN AGTTTTCAAN CAAACCAAAA CNGAATTTTG ATTTTANNAT 
    TNGNTNCACN NCCCTAAANG NGGGAAAAAG NTCCCTTGAA NAAAAANGGG 
    AAANANAAAG GGGNCNNGNN TTCCTNNGNG TTTTTTCCCC CGNNCCNGGG 
    GGGAAAAANC CAGNNNGGNN TTTTAAANCT TTTTTTTNGN GNGGGGGNAA 
    AANCTTTTTN GGGGNCCNNN NNNTNTCCCC CCCGNGNGNG NCNNNTATAA 
    NTANANNCCN TTTNCCCNNA ANGNNNNNAA CCNCNCGNGG GGNGNNNANN 
    CCNCGNANAA AAAACCTNTT TTTTAANANC GCCCNCNNNN TTTNTTTTTT 
    TNCTCCCNNN ANATTNTNNG GGCNGGGGGG GGGGNTTNNN NNTCCTNTGN 
    CGGGGGGGGG GGNNNCNCCN CCCCGGTG

AT2G01920.1

Model type
Protein coding
Short Description
ENTH/VHS/GAT family protein
Computational Description
ENTH/VHS/GAT family protein; FUNCTIONS IN: phospholipid binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Epsin-like, N-terminal (InterPro:IPR013809), ANTH (InterPro:IPR011417), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/ANTH/VHS superfamily protein (TAIR:AT1G14686.1); Has 316 Blast hits to 316 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 316; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01930.2

Model type
Protein coding
Short Description
basic pentacysteine1
Curator Summary
BASIC PENTACYSTEINE1 (BPC1) is a regulator of the homeotic Arabidopsis thaliana gene SEEDSTICK (STK), which controls ovule identity. BPC1 induces conformational changes by cooperative binding to purine-rich elements present in the STK regulatory sequence. STK is upregulated in bpc1 mutant.
Computational Description
basic pentacysteine1 (BPC1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity, specific transcriptional repressor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine 2 (TAIR:AT1G14685.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR