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13-0042-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5580629 [Map]; Strand: w
      • AT1G16310.1 - [+] show detail - Cation efflux family protein
        Distance: 0; Region: exon6 (3UTR)
      • AT1G16320.1 - [+] show detail - Uncharacterized conserved protein (DUF2358)
        Distance: -226; Region: promoter
    Flanking Genome Sequence: 13-0042-1 - 5-prime edge 
    GTGNACACAA GANGTAACTA NATTGNANNT AGGNATTGGG GGNNCGNATA 
    ATNAGNGCTN TANTTAATGT ACTCTTNNCG NNGTTTGNGT CTATANANAT 
    NNTTGANCGN TGTGNCAGTA ATCNGNNTAT CGAAGNGCGC ATNGCAGTGT 
    NGNCNNGAAG CTAATGNGTA AANATTAATA GNGTTNCAAA CACTAAACTC 
    AAAATAAAGA TAAAATCATA TATAATAAAA TAATGAATTT TAAATGAAAA 
    CCACTCAAAA NGGTTTTTAT CTATCTTCCG ACAAAATNCC CGTGCGTTCA 
    TTGCTCTTCT CCACAAGACA ACATTTCTCT GGCTCAGAAT CGACGCCATG 
    GAAATGTAAA GAAGAAACAA AGACGAGCTC TCAAATCCAG CAGCAATGGC 
    TTTTCTTCTT TCTAATCTAT CATCTCCGTC AATCCATCTT CAAACCGGAA 
    AATACCCAAA CNTTAAACCN NTTTTCAGGC AATCTNTATC GTCTTNGNCT 
    TCTGNTANCT ACGAATTTGT AGAAGAGAAT CTATCTACNC TCTCTNTATT 
    NANNCATCNA GTNTCNTNCC TTTTAAAGAC ACNCAAGTTC NNACANGACN 
    NAGNNCGCAG GATANGCCTN AAAACCCCGN AGGNNANGAA TTNACNANCC 
    GGGCCNGTNN ACNANANAGN NCNNANANNN NNNCNCNCCG GNGGNAANGG 
    NANNGGNGAN NNGNCANNGN NG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5580521 [Map]; Strand: w
      • AT1G16310.1 - [+] show detail - Cation efflux family protein
        Distance: 0; Region: exon6 (CDS)
      • AT1G16320.1 - [+] show detail - Uncharacterized conserved protein (DUF2358)
        Distance: -334; Region: promoter
    Flanking Genome Sequence: 13-0042-1 - 3-prime edge 
    GTGTTCAGGA CGATGAGTGA ACTCAAAGTC TATGTGGACA AAAGCTCGTT 
    CTACTTCAGC GAGCTGCTCG AGCTTTTCCT GAAGAGTCTC TCCGATGTTG 
    TGAGCCTCTT GTAGTCTCAT GTCCTCTGGC AAAACAATGT CCACTTCCAC 
    AAAGTAGTGT GACCCAAAAG TGTAAGCCCT TACTGTGTCA ATATGCTTAA 
    TTTGTTCGTG ATGGTTCCAT ATCAAGAATG TCAGTTTCGC CAAGAAATCT 
    GGTGGCGCAG AGCGGCCGAT CAGTGAATGG ACGTTCTCTA GTACGGTTCT 
    TGCCCATGTT GCTATGGTGT ACAAAGCAAT CTGCAACCAT AAAAAGGAAA 
    AAAAAAACGT TTTANTANTC CNACAAAACA TTTNTNGATC ATTTNAAATN 
    CCTAAGTTAG TTNCTTNCAA GTNTANCNCC GGTGGGATCA ATCCNCCAGT 
    AAAATTTGAC GGCCAAAACA GNTGTNGCTA ACCCNATTGA NTTANNGACA 
    ACNTCAAANA GGGNATNTTG ANCATAGGCC CTAACNATTT CNTTNTGAAA 
    TCCTNTGCAA TAAANCATTA AAANAAACTN CNNNATGGNG ACNGAAACCT 
    TGATACCAAT NATCCNTTTT TCCTTTGGGC TATTTCANAN NAANACCNCT 
    TTGAAACAAA AAACAAAATT TGGTTAAATN CTTTAATTAN CCNNTGAAAG 
    CCNNTTCCCC TGAAAATNTT NTAAAGACCC TTGGCA

AT1G16310.1

Model type
Protein coding
Short Description
Cation efflux family protein
Computational Description
Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT1G79520.1); Has 5067 Blast hits to 5063 proteins in 1838 species: Archae - 163; Bacteria - 4116; Metazoa - 44; Fungi - 281; Plants - 207; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G16320.1

Model type
Protein coding
Short Description
Uncharacterized conserved protein (DUF2358)
Computational Description
Uncharacterized conserved protein (DUF2358); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2358 (InterPro:IPR018790); BEST Arabidopsis thaliana protein match is: Uncharacterized conserved protein (DUF2358) (TAIR:AT1G79510.2); Has 274 Blast hits to 274 proteins in 79 species: Archae - 0; Bacteria - 78; Metazoa - 80; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR