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13-0051-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 9694030 [Map]; Strand: c
      • AT2G22780.1 - [+] show detail - peroxisomal NAD-malate dehydrogenase 1
        Distance: -1876; Region: intergenic
      • AT2G22790.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -1902; Region: intergenic
    Flanking Genome Sequence: 13-0051-1 - 5-prime edge 
    GCCAAAACTG AGTAATATTA TACATGTCAG ATACTCGGTT TTAGGATATA 
    ACAAGCAAAG AACTTTAAAA GAAAAGAGAT GAGAGTTTAT CTACCAACAT 
    CAAGAACGAA GGCCATTCCT ACATAAACCT CGTCTAAGAA ACTATATATG 
    AACAAATTGT CTTTAAATCG TAGGAAGAAA CTATATGGCT CTAGATATTT 
    GACTATCCCA AATTTAGAGA TTTTACTCAT GAGTGCAAAA ACGAGACATC 
    TACTAAGATT GGGCAAATTT ACTTGTTACC TGGCTTTTAC CTCCTTTTCG 
    GCTCGTATCC GAATTGAAAC TCAAGTACCC GGTACAAAAT ATGTCAAGAT 
    AAAACAATAA ATTAATATGT GAATAAGAGT GTGTTAAATA AAGTTATGGT 
    TATGAGTGGG TCGAATAAAA TTGTGGTTGT AAAATATCTT AAAAAATACT 
    ATAAGTTATA TTTTCTAAGC T

AT2G22780.1

Model type
Protein coding
Short Description
peroxisomal NAD-malate dehydrogenase 1
Curator Summary
encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.
Computational Description
peroxisomal NAD-malate dehydrogenase 1 (PMDH1); FUNCTIONS IN: in 6 functions; INVOLVED IN: regulation of fatty acid beta-oxidation, regulation of photorespiration; LOCATED IN: chloroplast, peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), Malate dehydrogenase, NAD-dependent, eukaryote/gamma proteobacteria (InterPro:IPR010097), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: peroxisomal NAD-malate dehydrogenase 2 (TAIR:AT5G09660.1); Has 16991 Blast hits to 16989 proteins in 5457 species: Archae - 237; Bacteria - 11827; Metazoa - 1259; Fungi - 489; Plants - 758; Viruses - 0; Other Eukaryotes - 2421 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G22790.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G67020.1); Has 111 Blast hits to 111 proteins in 33 species: Archae - 0; Bacteria - 44; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR