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13-0088-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3253286 [Map]; Strand: c
      • AT1G09970.1 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G09970.2 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-0088-1 - 5-prime edge 
    AGAGCGTNNA AAAACTAACA AAATCGGTTA TNCGATAACG GTCGGTACGG 
    GATTTTCCCA TCCTACTTTC ATCCCTACTG AGAGACCTAA GCTCCGATAA 
    ATCGCCTNGC AGANGATNGG TGGAAANGAA CTGTGACGTT CACCATANNN 
    CAANNCNCCN AATCCGGGGG GANANTTTTN CNGTCANGGA GTGGGCCGNA 
    AAGCNNTACC TGCCNTANAT TAGTAAGTTT CGAAATCTCC GACGGAATCT 
    CTCCGGTTAA TCCGCTATCG GAAATCTCCA AATTCCGAAG CTCCGTCAAA 
    TCNCCANNCC GGGNCGGAAN CCNCCCGGGC NNNCTGCAAT TCGACAAGTA 
    AAGCCACGAG AGTTTCTTCA NAGAAACAAC CTCCACCGGG AAATCANCCG 
    TCGCATCAAA CGGATTATCG CCTANGCTCA AAACGACGAG ACTCGTTGCG 
    TTNCGGAGCG ATTTCCACGG AAAGACGCCG GAAAAAGCGC TGTNGNNGAN 
    ATACANANNC TGNNNCTGAT TNANAGATGA NAACTNNGGG AAAGCACCNG 
    NGAATAATNG TNGCCGAGNT NCNNNNNCTN NNNNNTNNNG CNNNNNTNNA 
    NANNNNNNGG NGGATNATNN NNNNANNNNA ANTNNNNNNN NNANANANAN 
    TNGNNNNAAN ANNGNNNGNN NNNNNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3253277 [Map]; Strand: c
      • AT1G09970.1 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G09970.2 - [+] show detail - Leucine-rich receptor-like protein kinase family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-0088-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    ACTAATCTCG TTTCACTACA AATGTTCGAA AACGAATTCT CCGGTGAGAT 
    TCCGCTGGAG TTTGGTGAAT TCAAGGATCT CGTGAATCTC TCTCTGTATA 
    CAAACAAGTT AACCGGTTCT CTGCCTCAAG GACTCGGTTC ACTTGCTGAT 
    TTTGATTTCA TCGACGCATC AGAGAATCTC TTAACCGGAC CGATCCCTCC 
    AGATATGTGC AAGAACGGGA AGATGAAAGC TCTGCTTCTC CTGCAAAACA 
    ACCTCACTGG CTCTATCCCT GAGTCCTACG CTAACTGTTT GACTCTGCAA 
    CGGTTCAGAG TTAGCGAGAA CAACCTCAAC GGAACTGTTC CCGCGGGACT 
    TTGGGGATTA CCGAAGCTCG ACCN

AT1G09970.1

Model type
Protein coding
Short Description
Leucine-rich receptor-like protein kinase family protein
Curator Summary
RLK7 belongs to a leucine-rich repeat class of receptor-likekinase (LRR-RLKs). It is involved in the control of germination speed and the tolerance to oxidant stress.
Computational Description
LRR XI-23; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid autophosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G19700.1); Has 209037 Blast hits to 140396 proteins in 4701 species: Archae - 173; Bacteria - 22554; Metazoa - 63531; Fungi - 11010; Plants - 85931; Viruses - 478; Other Eukaryotes - 25360 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09970.2

Model type
Protein coding
Short Description
Leucine-rich receptor-like protein kinase family protein
Curator Summary
RLK7 belongs to a leucine-rich repeat class of receptor-likekinase (LRR-RLKs). It is involved in the control of germination speed and the tolerance to oxidant stress.
Computational Description
LRR XI-23; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid autophosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G19700.1); Has 205125 Blast hits to 136515 proteins in 4580 species: Archae - 168; Bacteria - 22290; Metazoa - 61642; Fungi - 10712; Plants - 85268; Viruses - 403; Other Eukaryotes - 24642 (source: NCBI BLink).
Link
InterPro Scan - TAIR