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13-0105-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 158997 [Map]; Strand: w
      • AT1G01430.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 25
        Distance: -342; Region: promoter
    Flanking Genome Sequence: 13-0105-1 - 5-prime edge 
    CTATTACGGG TGACATGGTA CCATTAATTA TTTCCAACGT AGACAGGATT 
    ACAGTAATCT CTACATTTAT GGAAATTAGG TGATTAGTTT GTATTTGTAG 
    TGTCTATCAA ACGAAACTCG ATAAGGATGG TCCTACAGTA TTTATTGATT 
    AATTATCACT TATCAGGAGC AAAGATAGAG ACTTGTTCTC TCTCTCGTTT 
    TTCAACTAAA GACAGAGACC TCGCACTTAG ATTTAATGGT TGAAACTTGT 
    AACTAAAACT ACTTGTGAGT ATATAAATTA GTATCTAGTT TATGCTTTAC 
    ACATCTAATT AGACGAAAAA ATATATTTTG TCTTCTGATA ACCGTGGTAA 
    TTTTCATGCT AATTTTGTTT TAAACGTTCT ATCTAGAGAA AAAAAAAAAT 
    CNTTNTNTNT AAACGGAAAA ATNAGTTNTN GGGGATTNAA AANATAANCN 
    AATNTTTAAA CATAAATNAG CCGTTTTAAA CANACTAAAT TATCNATTTT 
    TTTTTTTANC TCNGTTTTTT NATNGGGGGG NGGGNNCNCC NCAACCNCNN 
    GGCCCNTGGG GAAAAAATNT TCCCNNGGGC TTTAAATTTT GGCCNCNGGG 
    NNCCCNNTTN NCTTNAAGNT GNNTTTGGGA NNCCCCANAC CNANGGGNTT 
    TTTTTTTTNA AAANAATTTA NAAAGNCCCC NCNCCCTNGG AAGNTNTTTA 
    AANTTTTNCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 158881 [Map]; Strand: w
      • AT1G01430.1 - [+] show detail - TRICHOME BIREFRINGENCE-LIKE 25
        Distance: -226; Region: promoter
    Flanking Genome Sequence: 13-0105-1 - 3-prime edge 
    CGTAATAGCA ATGGCTTAAT CATCTTTAAA GAGACAACAA GTACACGATT 
    CGCGCTTTAC AGTTGTATAA TTGTAACTTT AAAAACAATT AAGGATGCCT 
    AATCATTAGA TTATTTTCTT CTTCTGAATA TCTCTCCACA AATTAAATGA 
    AGCCACGACC GACATAAACA AAGTGGAAAC AATTACAGTA ATTCAAACAC 
    ATGCAAACAA AAAAACTCGA GTTAATTATT ACTAACATGT TTTAGTACTT 
    CTGAGAAAAA AAGAAAAAAA CAGGATC

AT1G01430.1

Model type
Protein coding
Short Description
TRICHOME BIREFRINGENCE-LIKE 25
Curator Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description
TRICHOME BIREFRINGENCE-LIKE 25 (TBL25); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: TRICHOME BIREFRINGENCE-LIKE 26 (TAIR:AT4G01080.1); Has 1353 Blast hits to 1335 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 1340; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Link
InterPro Scan - TAIR