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13-0113-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3982808 [Map]; Strand: w
      • AT5G12310.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -366; Region: promoter
      • AT5G12320.1 - [+] show detail - ankyrin repeat family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-0113-1 - 3-prime edge 
    ATTGGAAGAG AACAACATGG ATATTGTGAT GAAGAGAAGG AGACAGACCT 
    CCAGCAAGTC GTCGACTTTC TCTGCAACTC CGTTTGTCTC TGCTCCCATC 
    CTCCACCGGC CAATACCAAT TTCAGTCTGA GGGTTTCTGG TTTCACCTTG 
    GTTTTTGTCC GATTCCTTTT TTTTTTNGGG TTGGGTTTNG CTNTATNTNC 
    AGNNTTTNTG TAATTAANGT AAAATTNTGG NGNCCCANCT AAAAANGATA 
    AAGGGANGNC ATTTTTNTNA AANCCAATTT TNATNAATTT NNAANGCNTN 
    TAAAAATNTN AAAAANGGCC AAATNTAATN CATNTTTNAG TTATNGANCN 
    CTTTATNTAC TTCATTTCTA AATAAANTAA NTAANTAAAA CTTTAAGGTT 
    TCCTTTTTTN GAGCCCCGCN TAANTNTTAA TTTTTTTTGG GNNCGCCNCT 
    TGATTTTTNT GGGGGGGAAG CCNTANTCGG TTAAATTAGG GNCTNCCCTT 
    TTTTTTTTTT TANAATNTCC NNAGCCGTTT TNTACGGGAG NATTNCCGAT 
    CGATCCNTTT TNCCNTTTTT TTTTTNNTTC TNGGGGGCCC CCAANNTTNT 
    TGGNNTCCCC CCCTTTTGGN GCCTNAAAAT TTTTTTTNNN AAAAANTGGT 
    NGGAANNGGG GTTTTNTTTT NNNCNNCCCA AATTTTTTTN NNANNAANNN 
    NCTTTTTTTT TTTTTTTTAN NCNAATTNTT GTGNTTTNAA NANCCCGGNT 
    TCCCAA

AT5G12310.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G19430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G12320.1

Model type
Protein coding
Short Description
ankyrin repeat family protein
Computational Description
ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G19150.1); Has 86458 Blast hits to 28632 proteins in 1360 species: Archae - 129; Bacteria - 7616; Metazoa - 44184; Fungi - 6856; Plants - 3179; Viruses - 915; Other Eukaryotes - 23579 (source: NCBI BLink).
Link
InterPro Scan - TAIR