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13-0138-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27517759 [Map]; Strand: c
      • AT1G73177.1 - [+] show detail - bonsai
        Distance: 0; Region: intron1 (5UTR)
      • AT1G73180.1 - [+] show detail - Eukaryotic translation initiation factor eIF2A family protein
        Distance: -157; Region: promoter
      • AT1G73180.2 - [+] show detail - Eukaryotic translation initiation factor eIF2A family protein
        Distance: -157; Region: promoter
    Flanking Genome Sequence: 13-0138-1 - 5-prime edge 
    GTGTGGAGTA CGGCTGCATT GTTTCTACCA GGTGAATCTC TTGCTAATTC 
    GATTCAAATT AGGTTTTTTT CCTTAGAGAA TCATATCTGT TTATAAAGAG 
    TCGGCCTTTG AGTTGTGGTA CGATTTCGTA TTTGGTCTCT TTACTAGATA 
    GTTCACCAAC TGCTCGACGT AATTTCTCAA TGAATCCCTA CTCTCTTTTT 
    CATAATCTCC GGCGAAACTA CCTGTAGATT GTTTTAGATA TTCATATATA 
    GGTTATTGAG CTTTATTCTG TCTGTTATAT ACTGTCACTT TCTCAAAATT 
    CAAAATTTTG GATATCAGAA GTCCCAATTC TGTTCAATGT TTTGCTATTG 
    TAAAGAAATT GACTTTTTAC TTCAACAATC CAANTTTCTT CACCATTTGT 
    CTGATATTTG TATATATGTT TACTTATTGG ATGATTTCAT CAGTAATTTG 
    TGGGATTTCC AAGCTCCAGT TTTTCGAATA TGGCGGAAGT AAGTCTTGGT 
    ATGCTTATAG ACATTGTGGA CGAAGAGTGG ATGAGGGACA CTTTGCCTGA 
    TGATGGTAAC CCTTTTTCCT CCTACATTAT ACCTCAAGAN CATTGGGGTT 
    TCTCCTATTT TCTATTTNAT AANANATTAT TGGTGCAGAT CTTCCATTGG 
    CCTCCAGTGC TTGCTGGTNA AACTGATGAT ACTGAAGAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 27517875 [Map]; Strand: c
      • AT1G73177.1 - [+] show detail - bonsai
        Distance: -21; Region: promoter
      • AT1G73180.1 - [+] show detail - Eukaryotic translation initiation factor eIF2A family protein
        Distance: -41; Region: promoter
      • AT1G73180.2 - [+] show detail - Eukaryotic translation initiation factor eIF2A family protein
        Distance: -41; Region: promoter
    Flanking Genome Sequence: 13-0138-1 - 3-prime edge 
    CTCCACACAG AGAACTAAAA ACCTCTAGCT TATAAAAAAA GCTGATTTTT 
    TTTCTCTTTG GTTATAAATA TACAGTAACC TTCTGGTTTA CCTAGAGTAT 
    TCAAAAGGCT GATGAAATTT AAGTTAGGGT ATCTCTTTAT ACGGTTCAGA 
    GCTTAAGCCG GCCACTACAG CGACCGACTT CTCTCGCCGT CGATTACCGG 
    ATCGTCTCCG TTATTGCGTG CTTCATTTAG GTGCTTTCTT CTTCTTCTTC 
    TCCAGTTTCA GATTTTCCTG TTCTTGCATT TCACCTTTGA GAAATTGTGA 
    TATAAAAGTT GTTTACTTTA CTTCAATCCA GTAAAGTAAT TTGGTGATTA 
    TCGTTTCCTC TACCGCGATC ACTGTGTAAT TGATGATGAG GGTTTTATAC 
    GTTCAGTACA AATTTGAGAG CTTTTATGTT GACTTCAATT TGTAACCAGT 
    GTATCAATTC TGGGATTTTA ATTTTCATCA TTGCATTATA TATTAGGTGT 
    ATCAAGTAAG CAATGAGTTC TTCACCGTCG TTGGAGATTT TAGGTACATA 
    TCTCTGAAAC TCAATTTCAT TCTTCGAGTT ATGTTTAAAT GTCTCTCTCT 
    TATCTAAAGT CGCTTTTCTG TGTAGTTAGA GAAGCTGAAG GCTTCACTGT 
    GTGGAATGGT CCTCCATTTA CTAATGGNCA GCCCACTNTN AAGCT

AT1G73177.1

Model type
Protein coding
Short Description
bonsai
Curator Summary
The BONSAI gene encodes a protein with similarity to the APC13 component of the Anaphase Promoting Complex. Plants with lowered level of BONSAI expression, resulting from hypomethylation, RNAi knock-down, or a T-DNA insertion show some abnormalities in shoot and inflorescence development.
Computational Description
BONSAI (BNS); Has 44 Blast hits to 44 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G73180.1

Model type
Protein coding
Short Description
Eukaryotic translation initiation factor eIF2A family protein
Computational Description
Eukaryotic translation initiation factor eIF2A family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Eukaryotic translation initiation factor 2A, central region (InterPro:IPR013979), Translation initiation factor eIF-2A (InterPro:IPR011387), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: translation initiation factor 3B1 (TAIR:AT5G27640.1); Has 898 Blast hits to 895 proteins in 262 species: Archae - 0; Bacteria - 8; Metazoa - 280; Fungi - 316; Plants - 125; Viruses - 0; Other Eukaryotes - 169 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G73180.2

Model type
Protein coding
Short Description
Eukaryotic translation initiation factor eIF2A family protein
Computational Description
Eukaryotic translation initiation factor eIF2A family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), Eukaryotic translation initiation factor 2A, central region (InterPro:IPR013979), Translation initiation factor eIF-2A (InterPro:IPR011387), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943); BEST Arabidopsis thaliana protein match is: translation initiation factor 3B1 (TAIR:AT5G27640.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR