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13-0145-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3830424 [Map]; Strand: c
      • AT1G11370.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 13-0145-1 - 3-prime edge 
    GTTTTAGGCT TCAGATATTT GAGGTATTAT CTCAAAAGAC AAATATATAA 
    TAAAACAGGA AAATTAGGTT TTTACAGTGA AACAAACTCT GTAAGAACAT 
    GGTTCGTCGG AAGTGACAAC CCAAAGCTCA GATCTGATGG ATAAAGTTAA 
    ATAACCTTAT TCATATTTCA ACAATGGTGA TATTTGTTTT GCTAACACAA 
    AAAAATTGAA GCT

AT1G11370.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: methylesterase PCR A (TAIR:AT1G11580.1); Has 2636 Blast hits to 2592 proteins in 316 species: Archae - 8; Bacteria - 611; Metazoa - 1; Fungi - 192; Plants - 1799; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR