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13-0148-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 3261974 [Map]; Strand: w
      • AT5G10370.1 - [+] show detail - helicase domain-containing protein / IBR domain-containing protein / zinc fin...
        Distance: 0; Region: exon1 (CDS)
    2. Chromosome: 4; Position: 439806 [Map]; Strand: w
      • AT4G01020.1 - [+] show detail - helicase domain-containing protein / IBR domain-containing protein / zinc fin...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-0148-1 - 3-prime edge 
    CCTATGAGAT ATCGCAAAAT GCTCTTCATG GCATTATTGA ATT

AT4G01020.1

Model type
Protein coding
Short Description
helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related
Computational Description
helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related; FUNCTIONS IN: in 6 functions; LOCATED IN: intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type, conserved site (InterPro:IPR017907), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), K Homology (InterPro:IPR004087), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, C2H2-type (InterPro:IPR007087), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (TAIR:AT5G10370.1); Has 13197 Blast hits to 12409 proteins in 1676 species: Archae - 4; Bacteria - 3384; Metazoa - 3503; Fungi - 1989; Plants - 1444; Viruses - 760; Other Eukaryotes - 2113 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G10370.1

Model type
Protein coding
Short Description
helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related
Computational Description
helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related; FUNCTIONS IN: helicase activity, zinc ion binding, ATP-dependent helicase activity, nucleic acid binding, ATP binding; LOCATED IN: intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Zinc finger, RING-type, conserved site (InterPro:IPR017907), Domain of unknown function DUF1605 (InterPro:IPR011709), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), Zinc finger, C2H2-type (InterPro:IPR007087), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (TAIR:AT4G01020.1); Has 13101 Blast hits to 12313 proteins in 1655 species: Archae - 17; Bacteria - 3301; Metazoa - 3520; Fungi - 1983; Plants - 1450; Viruses - 719; Other Eukaryotes - 2111 (source: NCBI BLink).
Link
InterPro Scan - TAIR