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13-0155-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1700777 [Map]; Strand: c
      • AT1G05670.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G05670.2 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-0155-1 - 5-prime edge 
    GNTCACCGNA AGAGCGCCCC GATGGACAGC NATACCAGCT GNTGACGAAG 
    CCATTCACGT GGCGTTGTCT GATGAACNAG AGGTGCCTCT ATNCGTAGCG 
    TTCAGAAATT TCATTCAACT CTTTTCACAT TCAGNCTCCG NGGACTCAGT 
    TTCTCAACTT TAACTGATAC GAGACCTTTT CCTGATTATT CAGNAAATTA 
    ANNCANACCN GGCGGGACCA ACGNGCCCNN NACGCGCNTA NAAATTNNCN 
    NAGAGGGGAG TAGGNNNTTC CCCTCTCCNN CCCNNNNNTG TANTTTA

AT1G05670.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR-like) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G01110.1); Has 76919 Blast hits to 23782 proteins in 722 species: Archae - 3; Bacteria - 657; Metazoa - 3612; Fungi - 1352; Plants - 68766; Viruses - 129; Other Eukaryotes - 2400 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G05670.2

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR-like) superfamily protein
Computational Description
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G01110.1); Has 76919 Blast hits to 23782 proteins in 722 species: Archae - 3; Bacteria - 657; Metazoa - 3612; Fungi - 1352; Plants - 68766; Viruses - 129; Other Eukaryotes - 2400 (source: NCBI BLink).
Link
InterPro Scan - TAIR