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13-0163-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 437658 [Map]; Strand: w
      • AT2G01940.2 - [+] show detail - C2H2-like zinc finger protein
        Distance: 2581; Region: intergenic
      • AT2G01950.1 - [+] show detail - BRI1-like 2
        Distance: 2978; Region: intergenic
    Flanking Genome Sequence: 13-0163-1 - 5-prime edge 
    CATGCGATTG CCTCATACTT CCCACAAAGG AACAACCATA TGCTTAACTT 
    CTATGTCATG ACAAAAATAC CCCTCACTTC TTTGATGGGA TGTATGAGTC 
    GACACCCTTT ACTCAATGGG TATTTCCGTC TTCTCTGATT TGTTTACTAC 
    TACCATATTC TATATTGATT ATTTTTTTAT TTTTTTATAA AGAGATCCAA 
    ACATTTTCGT TTTGCTTAGC TTCATCTTAT ATACAATCTC TTATTAAATC 
    AAGATTTTTT TTTCTGTATT ATNGNTTTAT TTCCGAATTA AAATTGAACG 
    TTTTATATCA ATTTTGTTCA ACAAATATTT GTTTTAGTTA CAAATAAATT 
    TCAAAAACTA TGCNCATATA ACATAAACGT TGGGTATTNG CNGGCTTCTA 
    TACTTTATTT AATTATTATN GANGAATATC AGCTGNGGTT NGNCTTTATT 
    NGNTNAAANA TGGGNAANAA AAAATATTAA ATCTCCCTCT ATTATATGGG 
    ATGGNCCCTT TTGCTANTTC NGGGGTTTNG CCCTGGAACT TGAAGCATTT 
    TATTATTGGG CNTTNGNAGG NTNGGGNNNA ANATNANCNN TTAGAAAANN 
    AAAATTGGGG AATNNCNTTT NNTCANNAAA NNCCAAAAGN ATNGTTNANA 
    ATNNNCANAA AAGGGNNNAA TCNGCAATGN AAANAANCNN AANNCCTNGA 
    NAGGGNNGGC CNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 437593 [Map]; Strand: w
      • AT2G01940.2 - [+] show detail - C2H2-like zinc finger protein
        Distance: 2516; Region: intergenic
      • AT2G01950.1 - [+] show detail - BRI1-like 2
        Distance: 3043; Region: intergenic
    Flanking Genome Sequence: 13-0163-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    ATTCGCATGT GATGAGAGAT TTTCATGCTA AGCCAATTCC AAATCCAACA 
    ACTAAGTACA TTATTATTAA ATATTGTTTC TTTTTCAATA TTGTTGACAA 
    ACAAAGATCT CTGGCCTTAA AAATGATTTT TTTTTCCATG AAACTTCTAA 
    TTGATAATGT AGTTACTTTA TTTANATGAA AAAGGTTNGT TTTTGTAGTG 
    AATT

AT2G01940.2

Model type
Protein coding
Short Description
C2H2-like zinc finger protein
Curator Summary
May be involved in an early event in shoot gravitropism such as gravity perception and/or a signaling process subsequent to amyloplast sedimentation as a putative transcription factor in gravity-perceptive cells.
Computational Description
SHOOT GRAVITROPISM 5 (SGR5); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 14 (TAIR:AT1G68130.2); Has 5058 Blast hits to 4353 proteins in 195 species: Archae - 1; Bacteria - 0; Metazoa - 3999; Fungi - 151; Plants - 716; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01950.1

Model type
Protein coding
Short Description
BRI1-like 2
Curator Summary
Encodes a leucine rich repeat receptor kinase and associated with provascular/procambial cells. Similar to BRI, brassinosteroid receptor protein.
Computational Description
BRI1-like 2 (BRL2); FUNCTIONS IN: protein binding, protein serine/threonine kinase activity, transmembrane receptor protein serine/threonine kinase activity, ATP binding; INVOLVED IN: in 7 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: BRI1 like (TAIR:AT1G55610.2); Has 216585 Blast hits to 138440 proteins in 4665 species: Archae - 155; Bacteria - 20149; Metazoa - 71991; Fungi - 10737; Plants - 87183; Viruses - 376; Other Eukaryotes - 25994 (source: NCBI BLink).
Link
InterPro Scan - TAIR