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13-0237-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 240335 [Map]; Strand: w
      • AT4G00550.1 - [+] show detail - digalactosyl diacylglycerol deficient 2
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 13-0237-1 - 5-prime edge 
    CTTTGAGTTG ACAGAATTTA TAAAAGCTGA TGATTCGCCG TCGAGTTGGG 
    GCAAATAAGC AAACGTAGAA GGAAGAGAGA CGAAACAATA TTCTAGGGTA 
    TGCCGTGAGA AGGAGAGAAT ATTCTCGGAA GATCTTCTTC GTTTCATTGT 
    TTATACAAAA TTAACAGACT GGTTGGTCTT CGCAGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 240219 [Map]; Strand: w
      • AT4G00550.1 - [+] show detail - digalactosyl diacylglycerol deficient 2
        Distance: 0; Region: intron1 (5UTR)
    Flanking Genome Sequence: 13-0237-1 - 3-prime edge 
    ACTCAAAGAT TGTTTCTGAA TTGGAATCTT ACAGGTATGG CTTCAATTTT 
    TTTTTTTTTT TTTTTTTTGG GGGAANNNAA AANCCCNNNA ANCNGGGNAA 
    AAAANNNNNN NNNTTNCCNA AAAAAAAAAA AANTTNNGGC CNANNNNTNC 
    CCCTTTGGGG NNANNNCCNA NNNNAAAANN NNCCCNNNNC NNAAAAANTT 
    TGGGGNNTNN NTTTTTNNNN NAAANNTTNG NNGGGGNNCC CCNGNNNAAN 
    NNNAANAAAA NCCCGGGGNC CCCCCCNNGG GNNTTTTCCC CCCCCTTTTT 
    TNCCNNGGGT NCGGGNNNCC CGGGNNAAAC CCNTTTNCCN GNNNCCCCCC 
    CCNNAAAAAN NGGGGGNAAA ANNGGCCCCC NGGGGGANCC CCGGGGGGCN 
    TTTAAANCCC NAAAANNTCC CCCCCNGGGN CNGNANCCCC CCNGNNCCTT 
    TAAAAA

AT4G00550.1

Model type
Protein coding
Short Description
digalactosyl diacylglycerol deficient 2
Curator Summary
encodes a UDP-galactose-dependent digalactosyldiacylglycerol(DGDG) synthase. Located in chloroplast outer membrane.
Computational Description
digalactosyl diacylglycerol deficient 2 (DGD2); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT3G11670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR