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13-0270-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26337542 [Map]; Strand: w
      • AT5G65800.1 - [+] show detail - ACC synthase 5
        Distance: -4730; Region: intergenic
      • AT5G65810.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 123; Region: intergenic
    Flanking Genome Sequence: 13-0270-1 - 5-prime edge 
    CNCAANTCAN GCTGACANAA ACTGGGTAAG NAGTTNANGA TATATTACTC 
    TATCNNACAC ATGANATNAA GAGATATACC ANCTGCNANG GANGGCANCA 
    CACACATNNT ATTGCAGCTT NAANCNAACA TATNCTGGGN NNACANACTA 
    CATTGNAATC TCAATTTGAT TAACCGACTA TTCATCTAGC GGACTGTAGA 
    GAAGAGGCAA ATTNATTAAA TAGTTAAATT ATGAATCAAA TCGCTGAGAA 
    TGAATTACAA TTTGTGGGAG TTTAGTTTCT TTCTATAGCG GAAAAAAGGG 
    TATTAAACAG AGAGGAGAGA TATCTGGTTT GATGNNTTAA GACCAGTAAT 
    AATAGTGNGT ACTAATGTAA TGGCTTGAGG NGGAAAACTT GACAAGCTGG 
    TTTGTATGAA CTCTTGGAAG CTGCTTGNNC GAATTTNTTG NTTGCTGNTT 
    NNNTNNNATN TAANNNNGNN NGGGAGAAGA AANGGANNNN NAGNNNNGGG 
    CGNGNNNNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26337434 [Map]; Strand: w
      • AT5G65800.1 - [+] show detail - ACC synthase 5
        Distance: -4622; Region: intergenic
      • AT5G65810.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 231; Region: intergenic
    Flanking Genome Sequence: 13-0270-1 - 3-prime edge 
    GGTTTGAGAT CGGCAGAAGA GTGGAGGTTT CTCAACAATC CGGTGAATT

AT5G65800.1

Model type
Protein coding
Short Description
ACC synthase 5
Curator Summary
1-aminocyclopropane-1-carboxylate synthase (ACS) is encoded by a multigene family consisting of at least five members whose expression is induced by hormones, developmental signals, and protein synthesis inhibition.
Computational Description
ACC synthase 5 (ACS5); CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422); BEST Arabidopsis thaliana protein match is: 1-aminocyclopropane-1-carboxylate synthase 9 (TAIR:AT3G49700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65810.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49720.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR