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13-0282-2

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 95294 [Map]; Strand: w
      • AT4G00230.1 - [+] show detail - xylem serine peptidase 1
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 13-0282-2 - 5-prime edge 
    CTTCAAGCAC GACGGCAATG TGCCTGCCGG CGAAGTTCGA TCGCCGATCG 
    ATATCGACGG CCATGGGACG CACACATCAT CCACCGTAGC CGGCGTTTTA 
    GTCGCAAACG CGAGTCTCTA TGGCATAGCA AACGGCACCG CCCGCGGCGC 
    GGTTCCGTCG GCGAGGTTAG CGATGTACAA GGTTTGTTGG GCGAGATCCG 
    GATGTGCCGA CATGGACATA CTCGCCGGAT TCGAAGCAGC GATTCATGAC 
    GGCGTAGACA TTATCTCCAT CTCTATCGGC GGTCCAATCG CCGATTACTC 
    TTCCGATTCG ATATCCGTCG GGTCGTTTCA CGCGATGAGG AAAGGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 95180 [Map]; Strand: w
      • AT4G00230.1 - [+] show detail - xylem serine peptidase 1
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 13-0282-2 - 3-prime edge 
    GCTTGANNCN CNCGGGCCGN NTANTNTNCC NGNCGAANNT NAATNNATTN 
    CAATATTTGN TTATTTCAAT CACGAACCCT TATGTTAATG CATAATTCTA 
    ATTTGCTCCC TAAACTCTTA AATTTATCAA CNTAACTCCT TATGTTAACG 
    CATAATTCTA ATTTGTCTCC CTAAACTCTT AGATTCGTCA ACTAACTCCT 
    TATTTGTTTT TCTAGCAATG ACATTTTCTT TAACAATTGC TCAAGAGTTC 
    ATGTTGCTTA GAGATCAAGA TTCTCTAGTG ATCAAAGTTT GTATTTAAAA 
    TCGATTAAAG TAGAAAATGG TAAGAGATAA ATTGTATACT TGTGGCATCC 
    GGTGAAATTN TTATAAGGTC CACAAGATCC TTTCCATTTA GCCGGAGGAG 
    GTCCTANACC ATGGTCTAGG AAACTCTCTG AGTCTGGCNG TTATTCCTGA 
    TTNGTTGNAT TATAGGAAGG GGTTANATGN AGTTNTNANG AAGCATAAAG 
    TGAATAATAT TCGAATNCAG TGTNGCNTNC TGNANAAAAT AANCCCTGNG 
    TNGGAGAACC ANCAANAGAT AANCATGNGG NCCTNGGCCN TNAGGANGNC 
    TGTTTTGGNG NNNAGAGGAA AGGCCNAANA AAATCCCCNN GGTTTNNNGC 
    CGCGGGGANG TNNGGNNTAN NGGATTNCNA NANCNGCNAA CCCCNNCCNT 
    NNNTNNNCGG CCGCGNGNNC ACAGGNNGNA ANGNNGAANN CGCNCTG

AT4G00230.1

Model type
Protein coding
Short Description
xylem serine peptidase 1
Computational Description
xylem serine peptidase 1 (XSP1); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT5G03620.1); Has 8915 Blast hits to 7721 proteins in 1255 species: Archae - 263; Bacteria - 5173; Metazoa - 170; Fungi - 606; Plants - 1952; Viruses - 0; Other Eukaryotes - 751 (source: NCBI BLink).
Link
InterPro Scan - TAIR