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13-0295-3

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 95277 [Map]; Strand: w
      • AT4G00230.1 - [+] show detail - xylem serine peptidase 1
        Distance: 0; Region: exon6 (CDS)
    Flanking Genome Sequence: 13-0295-3 - 5-prime edge 
    NTTCAAGCAC NACGGCAGAG TGCGGTGCCT NGCCAATTNG AGATGCGCCA 
    NNNNATNTCC TANGGCCANG NGNCNGNNCA CATCATTGAC AGNAGTNANC 
    CGGCGTGGNN ACGTCCGNAA ACCGCCGAGT CCTCNTATGG CATAGCAAAC 
    AGGCACCGCC CGCTGGCGCA GGTTCCGTCG GCGAGGTTAG CGGATGTACA 
    AGGTTTGTTG GGCGAGATCC GGATGTGCCG ACATGGACAT ACTCGCCGGA 
    TTCGAAGCAG CGATTCATGA CGGCGTAGAC ATTATCTCCA TCTCTATCGG 
    CGGTCCAATC GCCGATTACT CTTCCGATTN GATATNCGTC GGGNCGTTNC 
    ACGCNATGAG GAAAGGGATC ACCANCCNNG GCCGTATNNC ANTCNTTNTN 
    NTNTNTNTNC NNTNNCANNN AANCTTTNCN CCTTTANNAN TATNNAANNN 
    NNCGCTNANN CNANTAGAGC GNGGCNNNGA GANTANNNTA TNTGNNNANN 
    ANTTNGNGNG NANCNTNNGA TGNAGNAANA TTANAAGNAA TNNTNNNNNG 
    GGCNCNANGC GNNCNNCAAN NNNACGNTNA NNGGGGANGG CGNNGGCNNT 
    GNCNCACCNC GNCCGNNNNC NGNNGTTNNN CTNNTTNNCC CTNNGTATNT 
    TNACGNNCGN NNCAACAAAN ANNNNTGATA GNGNGANCAA CGNNCAAAAG 
    NAGAATNCAG ANNGNANANC ATNANGATGG TNNGACTGCN NNNANGAATA 
    GANGNGAGGA ACNANCNAAN ANNAANAATA NAT

AT4G00230.1

Model type
Protein coding
Short Description
xylem serine peptidase 1
Computational Description
xylem serine peptidase 1 (XSP1); FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilisin-like serine endopeptidase family protein (TAIR:AT5G03620.1); Has 8915 Blast hits to 7721 proteins in 1255 species: Archae - 263; Bacteria - 5173; Metazoa - 170; Fungi - 606; Plants - 1952; Viruses - 0; Other Eukaryotes - 751 (source: NCBI BLink).
Link
InterPro Scan - TAIR