1. Home
  2. Mutant Lines
  3. 13-0319-1

13-0319-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 19834976 [Map]; Strand: w
      • AT5G48910.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: -42; Region: promoter
      • AT5G48920.1 - [+] show detail - tracheary element differentiation-related 7
        Distance: -361; Region: promoter
    Flanking Genome Sequence: 13-0319-1 - 3-prime edge 
    NGNNGAGGGG GNGGGNNAGG GNGGGGGNGN NNNANNNNAC NANNNTTNNN 
    NANNATTTGA ANGAGANAAG GTGCNTTTCN CCGGACANAC CCNACGTCNG 
    AATCTTTGNN GGATNCTNAA TGATTCCAAC ACAGACACTN TNCTGTCCCG 
    GCGGAAACTC GCCGGCGNCT TNTNCGGCGA GNCATCCATC NNCACTCTTT 
    CCTNAAATCA ACAACTGTCG AACTATAAGA GACCTCTCTC AAATNCATGC 
    CGCTNTCATT AAATCNGGGC AAATGCGAGA CACTCTCGCC GCCGCNGAGA 
    NNCNCCGATN NTGTGCNACC TCCGATCTCC ACCACCGNGA CCTTGACTAC 
    GCACATAAGA GC

AT5G48910.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Curator Summary
Encodes LPA66, a chloroplast protein of the pentatricopeptide repeat family. In lpa66 mutants, editing of psbF that converts serine to phenylalanine is specifically impaired. lpa66 mutants also display a high chlorophyll fluorescence phenotype.
Computational Description
LOW PSII ACCUMULATION 66 (LPA66); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G66520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G48920.1

Model type
Protein coding
Short Description
tracheary element differentiation-related 7
Computational Description
tracheary element differentiation-related 7 (TED7); BEST Arabidopsis thaliana protein match is: tracheary element differentiation-related 6 (TAIR:AT1G43790.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR