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13-0326-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 14362898 [Map]; Strand: w
      • AT1G38230.1 - [+] show detail - transposable element gene
        Distance: -1870; Region: intergenic
      • AT1G38240.1 - [+] show detail - transposable element gene
        Distance: -5443; Region: intergenic
    2. Chromosome: 1; Position: 14408551 [Map]; Strand: w
      • AT1G38300.1 - [+] show detail - transposable element gene
        Distance: -1975; Region: intergenic
      • AT1G38310.1 - [+] show detail - transposable element gene
        Distance: -5424; Region: intergenic
    3. Chromosome: 1; Position: 14473406 [Map]; Strand: w
      • AT1G38423.1 - [+] show detail - transposable element gene
        Distance: -1985; Region: intergenic
      • AT1G38430.1 - [+] show detail - transposable element gene
        Distance: 5496; Region: intergenic
    Flanking Genome Sequence: 13-0326-1 - 5-prime edge 
    GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGTGTAGCC 
    GAAGTCCGNA AGAGTCTTTG GCTTTGTATT TTCTAACAAA GAAACACTAC 
    TTAGGGTTTT AAAATTCTAT TGCGGTTCTA TTTCTTATAT TCAATAATAC 
    ACATTACATC AAGTCATATT TGACTCCAAA ACACNTGACC AAACTTATTA 
    TTGCTTCTCA AAGCTTTGAT TGTGTAACCG AAGTCCGTAT AAATCTTTGA 
    CTTTATTTTC AAACAAAGAA ACACTACTTA GGCTTTTAAG ATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19598911 [Map]; Strand: c
      • AT2G47850.2 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
        Distance: 330; Region: intergenic
      • AT2G47860.2 - [+] show detail - Phototropic-responsive NPH3 family protein
        Distance: -1037; Region: intergenic
    Flanking Genome Sequence: 13-0326-1 - 3-prime edge 
    CCTGAGAAAA GAAACTATCA TGCTCAATTT AATATGCTTC GCCATCATTT 
    GCTCTTATTT GCCTTCCCCA CTTGTCTCTC TCTCTCTCTC TACACTCTTA 
    CTTTTCTTTT TGTCAAAAGC CCANGGAAGA AGATGAAATC AACTAAACTT 
    TGGACATCCG GCTTTGGATT TGGATTTTGT AGAGTGGGAN ATTGTAATTT 
    GTTGTGAAAT CTAACAACAA AATATTTACC AAAATATAGC TTTGCTTAAG 
    TGATATATGT AGTATTTTAA TGAATTGCGT ATTAATAGGT TAGGAGTAGT 
    AAACTTTTTG TTTTTCTTGT TAACTCGTTT GAGCTACTTC CGGAATTGAA 
    AAGAAAAAGA AGAGAGACAT AGAGGTATGA TTACAACCCC CAAAAGTAAT 
    GCAACCATTC ACATTTCCTG CAGTATAGTT TTCTTTTAAA AAAAATATAA 
    ATAACCTGGT GTAAAATAAA CAAAGAGAAG ACACGATAAG AGACCTTTTT 
    AACTTTTCAC CGAAAAGCAT AAGTAATAAA CAGCACACTT AATTGACTTT 
    TTACGCATAT ATGCATACAT ATATTGGTTT TCAATTACAA AAAGTACAGA 
    ACATTTAGCA AACTACCTCT GTATATATAT NGATATCCTG TAAGAAAAAT 
    CTAAATATTA TTAATATCAC CTTTGANACN CCCCNNAAAA GAAAGAAAGA 
    AAGANGGACN TTTGTTCACC CGGACGNGTG NGNGGACTGG

AT1G38230.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 1.7e-60 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT1G38240.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 1.1e-20 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)
Link
InterPro Scan - TAIR

AT1G38300.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 5.7e-61 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT1G38310.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family, has a 1.2e-20 P-value blast match to GB:BAA84458 GAG-POL precursor (gypsy_Ty3-element) (Oryza sativa)gi|5902445|dbj|BAA84458.1| GAG-POL precursor (Oryza sativa (japonica cultivar-group)) (RIRE2) (Gypsy_Ty3-family)
Link
InterPro Scan - TAIR

AT1G38423.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 1.7e-57 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT1G38430.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
gypsy-like retrotransposon family (Athila), has a 9.8e-109 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)
Link
InterPro Scan - TAIR

AT2G47850.2

Model type
Protein coding
Short Description
Zinc finger C-x8-C-x5-C-x3-H type family protein
Computational Description
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G18550.1); Has 1403 Blast hits to 803 proteins in 136 species: Archae - 0; Bacteria - 13; Metazoa - 242; Fungi - 122; Plants - 888; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47860.2

Model type
Protein coding
Short Description
Phototropic-responsive NPH3 family protein
Computational Description
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT1G03010.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR