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13-0348-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8584328 [Map]; Strand: w
      • AT3G23800.1 - [+] show detail - selenium-binding protein 3
        Distance: 493; Region: intergenic
      • AT3G23805.1 - [+] show detail - ralf-like 24
        Distance: -2054; Region: intergenic
    Flanking Genome Sequence: 13-0348-1 - 5-prime edge 
    GATGGGAGCA CCGGCCAGGA TGTGATCTCA AAGACGTCTT TGATGGCTTG 
    TGTCTAAAGT TGAGCCCAAG ACGCACTAAC AGAGAAATAT AAAATAAAAT 
    AGCAATCATT ATTCGATAAT AGACTAATTC GATGACAGAA AAGGAAATTA 
    TTCTTTAATT TAGAAATTAA TTAGCTTTTT ACTTTATAGA ATATAGAGTA 
    GGTAATTAAT GATCCTCACT ACCATATTCT ACCAATGAGC TTGCAGCAGC 
    CTGCCGAGAA ATAAGTAGGA AACTGAGACC TGATATGGAA TTGGTAATGA 
    TGACTGNTGA AGAANAAGCT GATAAAAAAA TCTAGGACAT ATGGNTNGGN 
    TCTTTCTCNT TTTGANATAT GGGGGCGGGN ATTGAAAGCT GAGTANTCAC 
    CCCCCTTGNN NAGAAATTTT AAAGGTNNCN NNCCCGGGGC GGGNGANANC 
    CCNNCCCCNT TNNNNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 8584212 [Map]; Strand: w
      • AT3G23800.1 - [+] show detail - selenium-binding protein 3
        Distance: 377; Region: intergenic
      • AT3G23805.1 - [+] show detail - ralf-like 24
        Distance: -2170; Region: intergenic
    Flanking Genome Sequence: 13-0348-1 - 3-prime edge 
    CTCCCATCAG CGTCTTGTGC TGAGGTTGTT ATCTGAAATC ATACCCAAAC 
    AAAGGACTGT TCCCATCTTT CTCCCACTAA TTAACAACAA AAATTTAAGC 
    AGCCTCTTAC TAAAAACCTT AAGCGAGAGA TTAGGTTTTC TTCTTTTTTT 
    TTTTTTTGGC CNNCNAAAAA NNTGGNCCNA NNNGTTACCC TNCNTTNGNG 
    GTAAANCCTN NGTTTNGCCC NNAANGGGTT CCCNCNNGGN GGTTTNNGGG 
    NAAAGGCANC NAAATTTTTN CNANNNNGGG GNANNNNNAA ANNTGGAAAN 
    NTTTTNAAAA NAAAANCANN GGNGGGNGGN GGTTAANTTC CNNCCNNNAN 
    NGNAANCCAA NNTTNGGGGG GGTCNNTTTN NTAAAATCCC NTGGGGTTTT 
    NNCCCTTNTT TTTTNCNCNN ANGGGTTTTT GGNAGGTANN NANCTTTTTT 
    TAAATGGNTC NCCCNCCCCC TNGGGGNTTT CCCCTTTTTT AANTGGNTCA 
    CCCNCANNNN ATTTTNNANT NACAANCCGG GGCNGNNANC CNCCCGGGNC 
    CNTNAA

AT3G23800.1

Model type
Protein coding
Short Description
selenium-binding protein 3
Computational Description
selenium-binding protein 3 (SBP3); FUNCTIONS IN: selenium binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 (InterPro:IPR011048), Selenium-binding protein (InterPro:IPR008826); BEST Arabidopsis thaliana protein match is: selenium-binding protein 1 (TAIR:AT4G14030.2); Has 910 Blast hits to 900 proteins in 207 species: Archae - 39; Bacteria - 194; Metazoa - 215; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 382 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G23805.1

Model type
Protein coding
Short Description
ralf-like 24
Curator Summary
Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
Computational Description
ralf-like 24 (RALFL24); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: ralf-like 31 (TAIR:AT4G13950.1); Has 244 Blast hits to 244 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 242; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR