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Mutant Lines
13-0368-1

13-0368-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 3; Position: 285960 [Map]; Strand: c
- AT3G01790.2 - [+] show detail - Ribosomal protein L13 family protein
  Distance: -182; Region: promoter
- AT3G01790.1 - [+] show detail - Ribosomal protein L13 family protein
  Distance: -200; Region: promoter
- AT3G01800.1 - [+] show detail - Ribosome recycling factor
  Distance: 0; Region: exon1 (5UTR)

TTTNGCNGGG AGNCCTAAAG ACTTCAACTT TCTNCNTCTT CTTCTTCTTC 
TTNTTCTTTN NTGAGGTGGA AGGAGGAAGA CACAAGAAAA ACAAGTACCT 
TNTGATTGAT GCCGNGTATA GAGCTAAGGC CCTCGACCTC GAATCGACNA 
CTGAAANGTN ACTAAAAAAA AGGGNGNGGG CCTTCANNTA TAAAGGGATT 
TCCTTTTTTT TTNNTGAGAA AATNCCAGAA NAGNCCTCCG CCTNNNNAAA 
CCCNNNGTNA NANAGNTCCT TCCGAGNGCN CCAGCNCGGN CNNNCAGNNC 
NNNANCGNNC GCNAACAAAC AGNTGATNNC ANANCCCCTT AAGCCCCNAG 
AAGANNAGNC AAACGCGNNA NNCGNTNANA NAANNAATNN NGTTGNCCTN 
NCGTGNANNA CAATNCNTTT CNTCNCCNTG ATANAGTAAT ATANACACAA 
AANAAAGANA TAACCANAGA ANTCCACAGN CTGCGCCACA TANCTNCANT 
ANCAANCGAG TNNTNNCACG CNNGAAAAAN NCNANAANNA NANGCANAAA 
TAGCAGCAGA AANANAGNNN GAAAATGGNC GNNAGAATCT AGTGGAGTNT 
TNGAANGGTG TCAAGAGCGG GGGGNNAGAA CGNAGAGGGA GNGAGANGGG 
TNNNGNAGNC AGCNNAATGA NGNATGGGGA GATNANNNAT AAAAANNAAT 
CNNGNNANAN CACCCNNNCG AAAGNNNNTG AGCGTCGNNA CANNCGNAAA 
AANANAANNA AGAAANAAT

3 prime edge [+] show sequence

Chromosome: 3; Position: 23399173 [Map]; Strand: c
- AT3G63340.1 - [+] show detail - Protein phosphatase 2C family protein
  Distance: -796; Region: promoter
- AT3G63340.2 - [+] show detail - Protein phosphatase 2C family protein
  Distance: -796; Region: promoter
- AT3G63350.1 - [+] show detail - winged-helix DNA-binding transcription factor family protein
  Distance: -295; Region: promoter

GTAAATAGCT CTAGAAAGTT CGAACTCCAC TTGGTGACTA AAAGAATTTT 
AAGGATCACC AGCTCCCCGC TATATATATA TATGGATTTA AGTCACCTAC 
GTGGCCATTG TCTTCGCCAC ATTTCCTGCC CCAACTGCCA TAAACTAAGT 
AACTAACCAC CAGCAAAAGC AGAGTACTCT GTTTTAAAGA AAAAAATACA 
CTTCCCGCTC TTTCTTCTTT TGGTTCTGTG CTGTTTTGGT CTTCTCCAAT 
ACAGGAACCC CAAATGCATC GTTTCCTTCC TTGGATTATA ATTTACGAAA 
AATCCAATCA TAGATCATTA GACTTCTAGC ATTAGCATTG CTAACAAGAT 
GGACCCGTCG TCAAGCTCCA GAGCACGGTC AATGCCACCG CCGGTGCCTA 
TGGAGGGATT GCAGGAAGCA GGGCCTTCTC CTTTTCTAAC AAAGACGTTC 
GAGATGGNNG GTGATCCAAA CACAAACCAC ATTGTGTCTT GGAACAGGGG 
AGGCATCAGT TTTGTCGTGT GGGATC

AT3G01790.1

Model type: Protein coding
Short Description: Ribosomal protein L13 family protein
Computational Description: Ribosomal protein L13 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13, bacterial-type (InterPro:IPR005823), Ribosomal protein L13 (InterPro:IPR005822); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT1G78630.1); Has 7701 Blast hits to 7701 proteins in 2675 species: Archae - 7; Bacteria - 5222; Metazoa - 123; Fungi - 136; Plants - 125; Viruses - 0; Other Eukaryotes - 2088 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G01790.2

Model type: Protein coding
Short Description: Ribosomal protein L13 family protein
Computational Description: Ribosomal protein L13 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13, bacterial-type (InterPro:IPR005823), Ribosomal protein L13 (InterPro:IPR005822); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT1G78630.1); Has 7701 Blast hits to 7701 proteins in 2675 species: Archae - 7; Bacteria - 5222; Metazoa - 123; Fungi - 136; Plants - 125; Viruses - 0; Other Eukaryotes - 2088 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G01800.1

Model type: Protein coding
Short Description: Ribosome recycling factor
Computational Description: Ribosome recycling factor; INVOLVED IN: translational termination, translation; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome recycling factor, bacterial-like (InterPro:IPR015998), Ribosome recycling factor (InterPro:IPR002661); BEST Arabidopsis thaliana protein match is: ribosome recycling factor, chloroplast precursor (TAIR:AT3G63190.1); Has 7776 Blast hits to 7776 proteins in 2635 species: Archae - 0; Bacteria - 5288; Metazoa - 113; Fungi - 65; Plants - 94; Viruses - 0; Other Eukaryotes - 2216 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G63340.1

Model type: Protein coding
Short Description: Protein phosphatase 2C family protein
Computational Description: Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein serine/threonine phosphatase activity, protein kinase activity, catalytic activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein phosphatase 2C-related (InterPro:IPR001932), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G63320.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G63340.2

Model type: Protein coding
Short Description: Protein phosphatase 2C family protein
Computational Description: Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein serine/threonine phosphatase activity, protein kinase activity, catalytic activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein phosphatase 2C-related (InterPro:IPR001932), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Protein phosphatase 2C, N-terminal (InterPro:IPR014045), Protein phosphatase 2C (InterPro:IPR015655); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G63320.1).
Link: InterPro Scan - TAIR

AT3G63350.1

Model type: Protein coding
Short Description: winged-helix DNA-binding transcription factor family protein
Curator Summary: member of Heat Stress Transcription Factor (Hsf) family
Computational Description: AT-HSFA7B; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to high light intensity, response to heat, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: root, pedicel, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Heat shock factor (HSF)-type, DNA-binding (InterPro:IPR000232); BEST Arabidopsis thaliana protein match is: heat shock transcription factor A7A (TAIR:AT3G51910.1); Has 2113 Blast hits to 2100 proteins in 228 species: Archae - 0; Bacteria - 6; Metazoa - 325; Fungi - 481; Plants - 785; Viruses - 0; Other Eukaryotes - 516 (source: NCBI BLink).
Link: InterPro Scan - TAIR