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13-0370-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3793689 [Map]; Strand: c
      • AT1G11290.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G11300.1 - [+] show detail - protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;ki...
        Distance: -549; Region: promoter
    Flanking Genome Sequence: 13-0370-1 - 5-prime edge
    CTTCTTCTTG AGAGATGTTC TTCTCTGAAA GAACTTCGTC AAATTCTTCC 
    TCTCGTTTTC AAAAATGGGC TTTATCAGGA GCATCTTTTC CAGACGAAGC
    T
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3793752 [Map]; Strand: c
      • AT1G11290.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G11300.1 - [+] show detail - protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;ki...
        Distance: -486; Region: promoter
    Flanking Genome Sequence: 13-0370-1 - 3-prime edge
    ATTGAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCG 
    CCGAGAAGAA GAGCCGCTGG ATGCTCATAG ACATTAGCCG GAATGTAATT
    TCTCTCGGAG AGAATGTGAC GATGGCGAGA CGGCGAATTA GGGATTTGAG
    GAACGGTAGA GACCTGCACC AATTGTGAGC TCATGCTTTT GTTCTGCAAA
    AATTAATCCT TTAGACAATT CCTTCTTCGA AGTATATACT TTATCCACAA
    TGTCTGGACT TGATTGAATT GACAGTGACG TGAGCTTATT CCGGAGAAGA
    AGGTGAAGTG AGTCACTCTT CTCAGGTGAA TTAAGACCAA GTCGTAATAG
    ACGGGCCAAC TTTGGTCAAT CAAACCGTAG AAAGACCGCC ATTAATAGAA
    AAATGATGAA TCTTTTAGCT AGCATCATCA TCTTAGAGGA AACAGTGCCA
    CTTGACTTTG ACATTTCTAA CAATATTTGG ACTTTTCTCT TGAGAATTTA
    ATCATCACCA CAACATTACA GAATCACTTA ACGTAACTCA AGACCCTACC
    ATTGTTAATT GTTACATTCA ATGCTGAGAT CTTTGCTATT AATANATCGG
    TTGTGTTTGT GTTGTTTCAG GACATATTAA GAACACAAAA GCTAGCTACA
    CCAAATTGGG ACTGTTCTTG AGAAGCTGGT ACTGAAGCTA TGAGACTTCA
    TGAAAGCTTG AGTCCTTTTG TTTGNATTCT TGGACTGGCC TTGCTTCTTC
    TTGANCGTGT NTCTGGCTCA G

AT1G11290.1

Model type
Protein coding
Short Description
Pentatricopeptide repeat (PPR) superfamily protein
Curator Summary
Pentatricopeptide Repeat Protein containing the DYW motif. Required for editing of multiple plastid transcripts. Endonuclease activity.
Computational Description
CHLORORESPIRATORY REDUCTION22 (CRR22); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 48258 Blast hits to 14436 proteins in 289 species: Archae - 1; Bacteria - 2; Metazoa - 166; Fungi - 164; Plants - 47192; Viruses - 0; Other Eukaryotes - 733 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11300.1

Model type
Protein coding
Short Description
protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding
Computational Description
protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding; FUNCTIONS IN: in 6 functions; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Apple-like (InterPro:IPR003609), PAN-2 domain (InterPro:IPR013227), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: S-locus lectin protein kinase family protein (TAIR:AT1G11330.2); Has 247442 Blast hits to 123826 proteins in 4585 species: Archae - 216; Bacteria - 26920; Metazoa - 91063; Fungi - 20518; Plants - 70734; Viruses - 831; Other Eukaryotes - 37160 (source: NCBI BLink).
Link
InterPro Scan - TAIR