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13-0393-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23138257 [Map]; Strand: w
      • AT3G62560.1 - [+] show detail - Ras-related small GTP-binding family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 13-0393-1 - 3-prime edge 
    TATATGTATA TCTATCATCT GAAGATTTTA CTATAGCTCA ATCATTTCAA 
    ACTATCATCT GCAAACTTAT ATAACCCAAC GGAGCAACAC AGTGGCTAAG 
    GAACAGAGTA GGAGTAGTAC ACAGCAAGAG CTTACTAGGT ACACATAACC 
    AGCAGAATGT AATCACAGGA CCTCATGCTG CAACATTCAA AAGAGAATTG 
    CTATATGACA AACTTCATTG AAGATTTCAC TTCACCTCTA TCATCTAACT 
    ATTGTTTATA TGGGCACAGG GAAGATTGTA ATCTATAACA GAGTCAGCTT 
    AGAGTCTACA TACAACTATA CGAGCGCAAT AGTCCTTCCA AAGACTTGCT 
    AAATTGATTG ACCTAACAAT AAAATCCAAA GAAGAAAGAA GATCAAACCT 
    TAGCGTAATA GTCCTTCCAG ACTCTACGAG CAATCTGATG ACCTCCCAAA 
    TCGAAGGCTT TGAACTTGAT TTTGCCGATA CTAAGCTCTT CCGATGTCGG 
    ATGCTGTGTC GGCTGATGCT GGACCAGTCT CTGAAACCCA AATCAAACGA 
    TTATCGCTGA TTAAGACTTT GATTCGTTCG CGCTAAGTAA AAGAAACAAG 
    ATTCTAGACA GCGATTACTG ATATGGCTCG AANAAAACGA ACCTCGTCCT 
    TTAACATGTG AAGCAANGGG GGTTTGCCNG CGTTGTCNAA ACCTAAAAAC 
    ANAATCTTCG CTTNTTTNTG NCCTAGTCCC

AT3G62560.1

Model type
Protein coding
Short Description
Ras-related small GTP-binding family protein
Computational Description
Ras-related small GTP-binding family protein; FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: secretion-associated RAS super family 2 (TAIR:AT4G02080.1); Has 6828 Blast hits to 6826 proteins in 379 species: Archae - 2; Bacteria - 48; Metazoa - 3250; Fungi - 1258; Plants - 1101; Viruses - 0; Other Eukaryotes - 1169 (source: NCBI BLink).
Link
InterPro Scan - TAIR