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Mutant Lines
13-0422-1

13-0422-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence

Chromosome: 4; Position: 9500321 [Map]; Strand: w
- AT4G16880.1 - [+] show detail - Leucine-rich repeat (LRR) family protein
  Distance: -3008; Region: intergenic
- AT4G16890.1 - [+] show detail - disease resistance protein (TIR-NBS-LRR class), putative
  Distance: 185; Region: intergenic

CGTAAGCTGA CAAATTCAAT GTCTTTGCGA TTAAAAATAG ATAAAAGTAT 
GGTACAATAC AAAACCAAGC CAAAGATGTT TTTCCAGAAT ATACTAAAGT 
GTGGCCTTTT TGAAACATTT ATTCTTTCAG GAAAAATGCA AAATTTTCAA 
AGCAAACACA GAGTGTTTCT GCATTCAGAT AAAAAAGAAA TTACAAACAC 
CTTTCAGGCT ACGAAGTTGG AGAATTAAAC GGATTTTGGT TCTCCGAGAG 
CTCTCCATCA TCTGCAGAAA AAAATGGCTT GNGTCATTAT CACTATAGTC 
ATAGTCAATC CCAAGTTGAT GCTAAAACAG AACAAAACAG AATAAGAAGA 
TGTTTCAGTT ACCATGATGA CAGCTAATGA TTCTGTTCAA GATCGGAATT 
NCTTCATCTT GTTGCTCACT TATNATGGAA TCANCACACA AAGNTGCCCC 
CNCNNNNNNN NGNTNANAAG AAANNNNGAG GNTNT

3 prime edge [+] show sequence
1. Chromosome: 4; Position: 9436445 [Map]; Strand: c
  - AT4G16770.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
    Distance: 0; Region: intron3 (CDS)
Flanking Genome Sequence: 13-0422-1 - 3-prime edge
```
TTGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTTAAAGA 
CATAGCATTT CATCTAGTCC ACATAGTANA GTTGGCAAAG AGATTACCTT 
CAAGAGGCCA CTTGTTAGGG TAAAGTTGAC CCAAAACTCC ATCTGAAGAT 
CCAAAAGTGA ACATCTCCTT GGAATCACCT GTTTGTATGA AAACTCAAAT 
GACACATTCC ACTTTTTGGA
```

AT4G16770.1

Model type: Protein coding
Short Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding; INVOLVED IN: oxidation reduction, flavonoid biosynthetic process; LOCATED IN: peroxisome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Isopenicillin N synthase (InterPro:IPR002283), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT4G16765.1); Has 6583 Blast hits to 6566 proteins in 839 species: Archae - 0; Bacteria - 934; Metazoa - 52; Fungi - 818; Plants - 3817; Viruses - 0; Other Eukaryotes - 962 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G16880.1

Model type: Protein coding
Short Description: Leucine-rich repeat (LRR) family protein
Computational Description: Leucine-rich repeat (LRR) family protein; BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 2574 Blast hits to 2178 proteins in 46 species: Archae - 0; Bacteria - 11; Metazoa - 1; Fungi - 0; Plants - 2558; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G16890.1

Model type: Protein coding
Short Description: disease resistance protein (TIR-NBS-LRR class), putative
Curator Summary: Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4.
Computational Description: SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1 (SNC1); FUNCTIONS IN: nucleotide binding; INVOLVED IN: response to auxin stimulus, defense response to bacterium, incompatible interaction, defense response, systemic acquired resistance, salicylic acid mediated signaling pathway; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 42615 Blast hits to 22768 proteins in 878 species: Archae - 40; Bacteria - 3631; Metazoa - 4485; Fungi - 289; Plants - 31985; Viruses - 14; Other Eukaryotes - 2171 (source: NCBI BLink).
Link: InterPro Scan - TAIR