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13-0425-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11112491 [Map]; Strand: w
      • AT4G20725.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-0425-1 - 5-prime edge 
    CTTCCATCCC CACCAAACCG GCATAGCAAA CACCGGTGGA CCAAGAGCTC 
    TCTTGGAAAG GAGTTTCTTC TTGCAGATTA TCAAACACCC ATTCAAACAA 
    AGTCTTATCA AAGAACGCAG GCTGCTTCCT CTGAGGCACA ATTCTAGTCC 
    AGATCCCTGA CATAGCTGGA CAATCTCTGA GAATGTGTAA AATTGTCTCT 
    ACTCCCCCTT TACAAATCTG ACAAATCCCC GACTCACCAA TATGCCTTCG 
    ATAACGCTCT GCATCTGTCA TAATCCCTTG ATTGCCCACT AACCAGAANA 
    AAGCTCTCAC ACGATCTGGG ACCTTAACTC TCCATATCCG ATTAAAGAAT 
    TTNTCCATAT AGGGNGTGGA CTATNATNCC AACTCAGNNT ATTATAAGCG 
    GNCNAAACAC GNGNACTGGN NATTTNNGAN TNTNATTTCN AGGNGATNTN 
    NTNTTTNTNN CCNAGGANGT NGGNCNNNAG GANNNNCCNG GCGNNNNGGG 
    CNGGNCNTGN GNNGAGGTCN GNGACGNGAN NNTANNGGNN AAACGAANNN 
    CNGNNAAANN NNNGNGAGAA CGGGNNGAGG GANNNGGTGN GANAANGGGN 
    AGGNANGGNG GNGNCCNNNG NGGGNGGGNN GGAAGNGNCG GNGAGANNAG 
    NNNGNCGGNG NGGGGNGGGN NNGGNGGGGN NGNGNAGNGN GGGGNNNAGG 
    ANGNNTNNGA GGGNANTNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11112375 [Map]; Strand: w
      • AT4G20725.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 13-0425-1 - 3-prime edge 
    GATGGAAGTG GAGATGCGGT AACATTTTTG GTGAGAAAAG GAAATGCAGG 
    GATAGAGTTC AGTTCATCAA GGATGTCGCG AAGGAAGTAT TTGTGGCGAA 
    TGCAAGGACT ACAGTTCTTA ACGGGGTTCC GACAAGAGTG GAGAGGCAGA 
    TTGGATGGGT CGCACCTAGT ACGGATTGGT ATAAGGTGAA CACAGACGGT 
    GCTTCTCGTG GAAACCCGGG GTTAGCAACG GCGGGTGGTG TGATACGAGA 
    TGGAGCTGGA AATTGGTGTG GAGGCTTTGC GCTTAATATC GGGAGATGCT 
    CAGCGCCTTT AGCGGAGCTG TGGGGGGTTT ATTATGGCCT TTACCTAGCT 
    TGGACTAAGG CGTTGACTCG TGTGGAGCTC GAAGTTGATT CGGAGTTGGT 
    AGTTGGCTTT CTCAAGACAG GGATCGGTGA TCAACATCCG CTGTCGTTCC 
    TGGTGCGGTT GTGCCATGGC TTATTATCNA AGGACTGGAT TGTCCGAATT 
    ACTCACNTGT NTAGGGAGGC TAATCGTNTA NCCNACGGTC TANCTAACTA 
    TGCTTTTTCT TTACCATTNN GNNTTNNTTC TCTTNTTNNT GTNCCNNNNT 
    NA

AT4G20725.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 1.2e-31 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR