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13-0447-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 4169 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron20 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon20 (CDS)
    Flanking Genome Sequence: 13-0447-1 - 5-prime edge 
    GATTTATCTT CAGCATGAAG GTGATTTACA AGCACCGATT ATAGATAAGA 
    CTCTTTGCCG AAGTTCATGA ATGACCTGAA AAATGAGCAA ACCAAGAAGG 
    CTTAATACAA AAGACCAATC TTTTTGAACC GAATAATTAT AGAAAGAGGA 
    AGTCGACGAG AACGAACGGA TTTGGAAGAA GAGAGCTTAG CCCATGTTTG 
    GATATGGGCA CTGCTGGTTT TGAGGTGAGA AGAGTAGGCA GCTTCTGCGT 
    TTATGAAGTA GACTGAGTTC TCTACTGCCT CAGCAACCCA AATTTCGTTT 
    GTCACATCCT TTGCTCTTTT AATTAGATTG CAAAATCCGA CCTGCCNAAA 
    ATTAAGACCC ATAACANGCN TATNTTTTTC AAAATTTAAT CNNTTGGNGC 
    NTATTNCTCT CTGTGGGNAN NNNNNCNNNA NTNNAATNNN NNCNTNCCNN 
    NNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 4053 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron21 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: exon20 (3UTR)
    Flanking Genome Sequence: 13-0447-1 - 3-prime edge 
    GATAAATCAT ACCCCACCTC TTCTCTTAAG TTTTGTTTAT AAGTTATCTA 
    ACCCTCTGCT GATTGTATCT ATTAAAGCCC ATTTTGCTAC ATCAATTTCT 
    GAAATTTGAA ATGTATGATC TACTCTCATT GATCAAGTAA CCTTTGAATT 
    ATTTTGTGTT GTAAACATAT CTAAAGGTTT GATGAAGTTG CATTAAGAAA 
    TAACATTTAT GCTATATATG ATGCTATGTT GATTCTGAAA ATCACACAAT 
    AAATTTGTTT AAAGGGGGTA AACAAATTTA CTTAACTCTC TCTCGCTATT 
    TAGTGACCAA AGATTCAATG AAAAGAAGAA TAAGGTTGCT TAGAGACAAA 
    GTTAGGGTTT TGCCCAAGAA CAATGAAGAA AACTAGGGTT TTTAGTATTA 
    AATTTCGGAT C

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR