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13-0474-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 514627 [Map]; Strand: w
      • AT1G02475.1 - [+] show detail - Polyketide cyclase/dehydrase and lipid transport superfamily protein
        Distance: 0; Region: intron3 (CDS)
      • AT1G02480.1 - [+] show detail - pre-tRNA
        Distance: -867; Region: promoter
    Flanking Genome Sequence: 13-0474-1 - 5-prime edge 
    NTAGGAANAC CTNNAAGAGA TCTCCAATGG ATTTTCTGAT NAGGAGTAGG 
    CTGCACAATA AACAACCCAA CAAAAAGCCA ACAGTTTTAC ACAATTAGTC 
    TAAGTACCAC AGAGGAGCAT TGATCTAAAA CAGAATGATG GATTCTTGCC 
    TGAAGATTAC GAGCAAGCCA AGAATACTTA ATGTCTTGAC CAAAAGCATT 
    GTATTTGAGT GACCAACGTG ATAGATCAGG CTTGNCCTTT ANCACCTNNC 
    ACANANAACA NAAANCGGGG GNAANTANTN NAAGAAAAAA ANANTNTNGG 
    NNGGGGNNCC NNCNCCCCNC CNNGGGNNNN NNNNNGGGGG GGGGGGGTNT 
    TANCCNNCCC GGGGGNGGGG NNANAACCCG GGNCCNTNAA AGAGGANNNN 
    NANANCCNCC CCC

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 514517 [Map]; Strand: w
      • AT1G02470.1 - [+] show detail - Polyketide cyclase/dehydrase and lipid transport superfamily protein
        Distance: -893; Region: promoter
      • AT1G02470.2 - [+] show detail - Polyketide cyclase/dehydrase and lipid transport superfamily protein
        Distance: -906; Region: promoter
      • AT1G02475.1 - [+] show detail - Polyketide cyclase/dehydrase and lipid transport superfamily protein
        Distance: 0; Region: intron4 (CDS)
      • AT1G02480.1 - [+] show detail - pre-tRNA
        Distance: -977; Region: promoter
    Flanking Genome Sequence: 13-0474-1 - 3-prime edge 
    CTTNNTGACA AGTGNCAGGT AGATNCTAAT AGGNNCTANC TACACACATC 
    ATGNNTTATC TAGTCNTGAN CNGTNNCNTT TGGNACNTAT CCAATGCATG 
    AGGCANCGTT CGATTCTTTC CTAAAGGTCC TTCATCGTGC NTNGTAGAGG 
    TAAAGAACAC TCCATTTTAT CACACATCAT TNNGATCACA ATCCTACTAG 
    AATAGNCCTC TAATGCTNTT NCTTTTNTCT NGCNNNTCTG CCTCATCTNT 
    TANCTAACCG TATCATATGA AGTCCCTGCC CTATTAACCC NTGNNGCGNT 
    GGAGNGTATC TTTTNNCCTN NAAGTCTATN TGTNNCGCTG AATGTCACAT 
    ACAANCNNCG ATTATTATAN TNAACATNCC NNNNTNCTCN NTGATTNNNT 
    TGTNCNNNNN GAANCANNAG NNGGGGNNGT NNTNTANCNT ANNCNNNANN 
    NNNNNANNG

AT1G02470.1

Model type
Protein coding
Short Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Computational Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G02475.1); Has 391 Blast hits to 391 proteins in 131 species: Archae - 0; Bacteria - 247; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02470.2

Model type
Protein coding
Short Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Computational Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT1G02475.1); Has 390 Blast hits to 390 proteins in 132 species: Archae - 0; Bacteria - 247; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 89 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02475.1

Model type
Protein coding
Short Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Computational Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: Polyketide cyclase / dehydrase and lipid transport protein (TAIR:AT4G01883.1); Has 515 Blast hits to 515 proteins in 169 species: Archae - 0; Bacteria - 342; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G02480.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Phe (anticodon: GAA)
Link
InterPro Scan - TAIR