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13-0487-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 532577 [Map]; Strand: c
      • AT4G01265.1 - [+] show detail - raffinose synthase family protein / seed imbibition protein-related
        Distance: -803; Region: promoter
      • AT4G01270.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-0487-1 - 3-prime edge 
    GATTTATGTG TTTAATCGAT TTCTTTCGGA AACCCTAGTT TGCAGCAATG 
    GTTTGAGTAT TGCCCGAGTA CGAACAAGCG AAATTGTCCG ATTTGTAAGC 
    AGAAGTGCCT CTCTAAAGGA TC

AT4G01265.1

Model type
Pseudogene
Short Description
raffinose synthase family protein / seed imbibition protein-related
Curator Summary
Pseudogene of AT4G01265; raffinose synthase family protein
Computational Description
similar to ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G55740.1); similar to unknown [Populus trichocarpa] (GB:ABK95734.1); contains InterPro domain Raffinose synthase (InterPro:IPR008811)
Link
InterPro Scan - TAIR

AT4G01270.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01245.1); Has 5689 Blast hits to 5015 proteins in 477 species: Archae - 145; Bacteria - 387; Metazoa - 2946; Fungi - 366; Plants - 512; Viruses - 10; Other Eukaryotes - 1323 (source: NCBI BLink).
Link
InterPro Scan - TAIR