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13-0525-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 117615 [Map]; Strand: c
      • AT4G00270.1 - [+] show detail - DNA-binding storekeeper protein-related transcriptional regulator
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 13-0525-1 - 5-prime edge 
    CNGAGCANGA TGCATTCGCG GCCGGAGATG TCTTNGGNTN NCGGAGGTTA 
    TCAACNGAAG TNGCANCTNG AGATGCTGAT GAACCTTGGA AATGGTNGAC 
    CGAAGAAAGN TNAGTGATGA ATGGAAAGCG TTATGTGTNG AGGAAACAAG 
    ATTCAATATC AAGAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 15203344 [Map]; Strand: w
    Flanking Genome Sequence: 13-0525-1 - 3-prime edge 
    TTGGTANCTA CTTGGNGGTG TTTGAATNCA TCTTAGAATT ACCAANCCCG 
    GGCCGTANAC CANGCTGTAG CCCTATANTN TAANCANATA TGNGCCAGGA 
    CTNANNANCA NCNNGAAACA TGNACCANCN CCTCTCGTAN TGACAGGGNT 
    CTTGAGCNNA TGGNACTGAG TGTCACAACA GANCTTCTAT TACTAACTNT 
    AATTTGCAAA TCATCATAAA TTTTTCCTTT GATGCTAGTT CATGTTTTCA 
    CCTTACATAC ACACAATTAN AATANCTGCA AACGCACGTG CATGAAATTA 
    GCTGAACCTT TTAAGGTATC GCGATCCCGC AGAATATGTA GCTAAGCAAT 
    GAATTACCTG CCCGGNCGNC GAACAAGCNT GCCCTATAAN NAAAANANNG 
    NNNNNNNTNN NNNT

AT4G00270.1

Model type
Protein coding
Short Description
DNA-binding storekeeper protein-related transcriptional regulator
Computational Description
DNA-binding storekeeper protein-related transcriptional regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT2G25650.1); Has 282 Blast hits to 277 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 255; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G38096.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT5G38100; methyltransferase-related protein
Link
InterPro Scan - TAIR