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13-0533-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3057561 [Map]; Strand: w
      • AT1G09470.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: coty...
        Distance: -587; Region: promoter
      • AT1G09470.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; BEST Arabidopsis t...
        Distance: -118; Region: promoter
      • AT1G09480.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -414; Region: promoter
    Flanking Genome Sequence: 13-0533-1 - 5-prime edge 
    GTGAAAATGA AACCTGGAGG ATGGGGTCCC TATCCGTTAG GTTCGGATGA 
    GAGATCATTT AAGGAAAGTG ACTAAAATAT TTAGCTTCGG AGTTACCGAG 
    CCTAGGGCTT CGAATTTTGT GTCATTTAAA GTAACGAATC CGTAGCTAAC 
    CTACGCATCT GGCGCAGTTA GCTAACTTGC TAGGTTTGAC TGTAGCGCGG 
    CAAAATCTAT TCGTTCAAAG TTCAAACTAT AGAAAGCCAC GTGTGCATAG 
    TGTAAACGTA GTCGGACCAC TTTTGCAGCC ATATCAAACC GTTGGAGATC 
    CGATCGAATA CAACTACGAA AGATATTAAA AAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 3057445 [Map]; Strand: w
      • AT1G09470.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: coty...
        Distance: -471; Region: promoter
      • AT1G09470.2 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; BEST Arabidopsis t...
        Distance: -2; Region: promoter
      • AT1G09480.1 - [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
        Distance: -530; Region: promoter
    Flanking Genome Sequence: 13-0533-1 - 3-prime edge 
    CNNTNCACTG TCACTTTCCT CCTNTGGAGA AATCACNANC TCGAACAAAT 
    CTGCNANTCN GNTTGTTCTT CCTACCAAAC CCAGAAACCT AATCTTGNCC 
    AACCGTGCNA TGGANACTGG GGGGTCAGCT GAGAANGTGA AGGATNTTTA 
    GGGTAGTGAA AATACANNAN NNTCCTGTAC AGAGATTTAT GAACTTTTTN 
    AANAGGTCAC NTGTNTTAGG CTGNATACTA GCNAAGTATA CNTNCNTNTN 
    ANANNTTATT TATTGANGTN AANGGGACCA CACAAGTATA CNTNGCCTNT 
    TTAGCGTATN CCCNACCTCG NTGAACGGCN GNTCTTTCTA AGAACTTGAT 
    TGANACAAAC AAGATTTACA GGATTATNTT NTAGTGGACA TATTATGAAT 
    GACNNACNCA TNCTNTANCT ATGCTGANAT CGGNCATNCA ATGTGCAGGA 
    NTNATTCATG TNCAGGGACA CGTGANNATC ATGACAANCT GCTANCTCNG 
    ACGCGCTCTG ATTTTGGGGT TCTTCTGGAG ANGCCATNTG GCTCGATNAC 
    TGAACAACAG CGGANATNTT NNGGNGGATA AAATGCCTCC NGGNGCNTCT 
    TCANGANAGG ATGATNCNNG TTGGNTGATT NGGATGGCAC TAGAAATCCN 
    NNNGTTAANT GTGNCGANCC NNCNNNGNGN GNTNANGAGC CAGACCNNNN 
    AGAGNACAGN GCNTNTANTC ANAGGAACCT NTTCNCCNNG GCCTNTGGNC 
    TA

AT1G09470.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: cotyledon; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26770.1); Has 55019 Blast hits to 30094 proteins in 2088 species: Archae - 730; Bacteria - 6553; Metazoa - 28961; Fungi - 4800; Plants - 2559; Viruses - 111; Other Eukaryotes - 11305 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09470.2

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26770.1).
Link
InterPro Scan - TAIR

AT1G09480.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Curator Summary
similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: alcohol dehydrogenase (NAD) activity, cinnamyl-alcohol dehydrogenase activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT1G09490.1); Has 11337 Blast hits to 11295 proteins in 1830 species: Archae - 188; Bacteria - 4702; Metazoa - 514; Fungi - 973; Plants - 2502; Viruses - 52; Other Eukaryotes - 2406 (source: NCBI BLink).
Link
InterPro Scan - TAIR