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13-0538-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4890242 [Map]; Strand: c
      • AT5G15090.2 - [+] show detail - voltage dependent anion channel 3
        Distance: 0; Region: intron4 (CDS)
      • AT5G15090.1 - [+] show detail - voltage dependent anion channel 3
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 13-0538-1 - 5-prime edge 
    CAAAANNNNT TCAACACGGG CAAAACTAAC AAANCGGTTA TACGATAACG 
    GTCGGTACGG GATTTTCCCA TCCTACTTTC ATCCCTTATT TCCATGACTA 
    TGCTGGTATC TCCACCAGCG TTGGATTCAC AGCTACCCCG ATTGTCAACT 
    TTTCCGGTGT GGTTGGAACC AATGGTTTGT CTCTTGGTAC TGATGTGGCC 
    TATAACACCG AATCTGGCAA CTTCAAACAT TTCAATGCTG GTTTCAACTT 
    CACCAAGGAT GATTTGATTG CTTCCCTCAT TCTGTAAGTG CCTCCCTCCA 
    TATCAAATGA TGACTTGAGA TTTTAATGCT GCTGGTNGGN CNANAGTTGT 
    TTCTTAAACT GTCTTTTTTC AGGAANNACA AAGGTGAGAA ATTGAATGCA 
    TCCTACTACC AGATTGTGAG CCCGTCGACT GTGGTTGGAG CTGAGATTAG 
    CCACAACTTC ACGACCAAAG AGAACGCCAT CACTGTCGGA ACTCAACACG 
    CGCTTGACCC ATTGACCACA GTGAAGGCAA GAGTGAACAA TGCTGGTGTG 
    GCTAACGCTC TGATCCAACA TGAGTGGCGT CCAAAGTCGT TCTTCACCGT 
    TTCTGGAGAG GTTGATTCTA AGGCGATCGA TAAGAGTGCC AAGGTTGGGA 
    TTGCTCTCGC TCTCAAGCCC TGANAAGATA CCACCAAATG GGCCCTGAAG 
    TGGGTANAAT AGGNGTTATT TCTTTTTCGC TTNAATNTTG GACAAATCGN 
    TGNCTGGTTG CTAACAATCT TCATTNGNTT TTTGNCCGGG GNNGGGATTN 
    NAAAAAATAA ANAAAAAATC TNTNNAAGGA NCNNNTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 4890226 [Map]; Strand: c
      • AT5G15090.2 - [+] show detail - voltage dependent anion channel 3
        Distance: 0; Region: exon5 (CDS)
      • AT5G15090.1 - [+] show detail - voltage dependent anion channel 3
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 13-0538-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCAA 
    AATACTGAAC CTCAGCCTGC TCAGAAAACA ACAAATAATG GTTATCTCCA 
    ACATACCAAC CTTTAAAAAA ACGGAACAGA AAGAAAAGAA AGCTGGTGGA 
    GTTATATACC TTTCCAGATT TGTGATCGGG CAACTTAGCC TGAACAATAA 
    CTTTCAGTCC AGGGGCAGGC TCATCAAAGG TAAGAGTGGT CAAAAGCTGA 
    AATTATTCAC ACACAAAAAA AAATCAATTG AATACTCTAG CAGCAAATCG 
    GCAACATCAT ATATCTACTA AAAAGAGCTA AAGCAAAAGT CTACTTACAG 
    AANAATCAGN GGAAACTTTG ACATCANCAG NGAAGTTCTT GTTCTTCACT 
    TGGGTAGCAA CATCACCCAA AAACAAGCT

AT5G15090.1

Model type
Protein coding
Short Description
voltage dependent anion channel 3
Curator Summary
Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.
Computational Description
voltage dependent anion channel 3 (VDAC3); FUNCTIONS IN: voltage-gated anion channel activity; INVOLVED IN: defense response to bacterium, response to bacterium, anion transport; LOCATED IN: in 10 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: voltage dependent anion channel 1 (TAIR:AT3G01280.1); Has 896 Blast hits to 896 proteins in 198 species: Archae - 0; Bacteria - 2; Metazoa - 411; Fungi - 154; Plants - 298; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G15090.2

Model type
Protein coding
Short Description
voltage dependent anion channel 3
Curator Summary
Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.
Computational Description
voltage dependent anion channel 3 (VDAC3); CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: voltage dependent anion channel 1 (TAIR:AT3G01280.1).
Link
InterPro Scan - TAIR