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13-0542-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9544274 [Map]; Strand: c
      • AT4G16950.1 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon1 (CDS)
      • AT4G16950.2 - [+] show detail - Disease resistance protein (TIR-NBS-LRR class) family
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 13-0542-1 - 5-prime edge 
    CTCCCAGGGC GTCTCCTTCT TCTTCTCGCA GCTGGAGATA CGATGTTTTC 
    TCGAGCTTCC GTGGAGAAGA TATCCGTCGA TCATTCCTCA GCCATCTTCT 
    TAAGGAACTC GACCGCAAAG CAATCAAAAC ATTCCTAGAT ACTGAGATCG 
    ATAGAAGCCA CTCAATTGGC TCTGCGCATA TATCGGCTGT TAGAGAATCG 
    AGAATTTCAA TCGTTCTTTT TAGTAGAAAC TATGCTTCTT CCTCGTGGTG 
    CTTGGATGAA TTGGTTGAGA TCCACAATTG CTTTAAGGAA GTGGGTCAAA 
    TAGTGATTCC AATTTTCTAC GGGGTTGATC CTTCTGAAGT TAGAAAACAA 
    ACCGGTGAAT TTGGCAAGTT CTTTAAAAAG ACATGCAAGG GAAAAACAAA 
    GGAGCAGAAA CAAGGGTGGA TGCAAGCTCT CGCAGAAGTA GCAAATATCC 
    CCGGGGAGGA TATTCAGAAC TGGTATTTTC TTTGNGATTC CATAATTTTC 
    TGTGTTTGNT AATTTATTTA NTTATCACGG AACTGGATTC TCTTTGGATA 
    NACTTCAGGG ATGCTCACAA TNGACTNTTT GTTNTTAGGG AAAACGATGC 
    NNNCNTGATT GAAAAGATNN CAACGANNCC TTATNTAAAC TNNTNAAACC 
    ANGGGATTGN TTTTNNNNAA TTTNNTGGAC TTNANCNNNT TNNGNANGAN 
    TANNNNCNNG GCCNNNNNNC NCNNCNC

AT4G16950.1

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary
Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description
RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33222 Blast hits to 18539 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2568; Fungi - 207; Plants - 26793; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G16950.2

Model type
Protein coding
Short Description
Disease resistance protein (TIR-NBS-LRR class) family
Curator Summary
Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica.
Computational Description
RECOGNITION OF PERONOSPORA PARASITICA 5 (RPP5); FUNCTIONS IN: nucleotide binding; INVOLVED IN: defense response to fungus, incompatible interaction, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16920.1); Has 33205 Blast hits to 18535 proteins in 791 species: Archae - 22; Bacteria - 2185; Metazoa - 2566; Fungi - 207; Plants - 26778; Viruses - 32; Other Eukaryotes - 1415 (source: NCBI BLink).
Link
InterPro Scan - TAIR