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13-0543-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4021807 [Map]; Strand: c
      • AT1G11910.1 - [+] show detail - aspartic proteinase A1
        Distance: -824; Region: promoter
      • AT1G11915.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -18; Region: promoter
    Flanking Genome Sequence: 13-0543-1 - 3-prime edge
    CTTTACACCA CCAGATTATA ATTTCATAAC TAAAAACTAC CCAATAATCA 
    AATCTAAACT CCTAATTTTT GAACAATGTC TCCACTTCAC TCTTACTTTA
    TCTTCTTCTC CCTTCTCATG ACCATCCTTC TTCAATCATC AACAACATCA
    TCCCAATCAA ATCTCTGCAG ATC
  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8133257 [Map]; Strand: c
      • AT1G22980.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 13-0543-1 - 5-prime edge
    GACGNANGAN ANCACCATCC NGGGCCGGNA CNNNGNGNGC GCGNTNNNCT 
    NGAGATGNAA AANNCNTTNG CAATGAATCC TNCGGANAAC CGNGNAGGGG
    GAGANAGGGG AATNTGATCA ANNACNTNAC TAAGNTGTTA NAGAGGAGAT
    NNACATNGCG GGCNAGTGGA NCNANCGTGC TNTANAGCAT NCNAGTAATN
    ACCAGGATGA NGGAGAAGGA GAATTCAAAT GAGAATAGCG TGTNNGTGGA
    GTCGCTAGAN AAGCTACTTA AGTTGTGTCA AAGAAGTGGA GNAGTGATAG
    AAGAGCTTGG TACTTGCGTT TATCATCCAC CGCTGAAGAT AGACAAGATA
    ACTCAAACGG TGAAGATACT AGAGGGAAAT CTCGATGAAG TTGAGGCTCA
    AGTTGAGTAT ATGAAGAGGT CTTCCAACGC CTTTCCGGGA GTTTGCAGAA
    AGCTGCGAGA CGCGATCAAA CTCATGGAAG TTGGATTGGA AAAAAGAAAG
    GATTTGAATC AAATTCTGAT TTCTCGTNAA AACACTCTNT ACAATGCNTC
    TCNANGNATG TNNNTTCTTA CCTANNNNAG NNNGGGNGNA TGTNNNCTCG
    CANTGAANTC NACAAAGGAT TAGGCCGAAA TGGTTNGCAA GTGAGGGATC
    CAAAAACTTC TCGGNGAATC NANGNNCTAN ATACCANACG GGGNGNGNAN
    ANGNAAGNAA

AT1G11910.1

Model type
Protein coding
Short Description
aspartic proteinase A1
Curator Summary
Encodes an aspartic proteinase that forms a heterodimer and is stable over a broad pH range (ph 3-8).
Computational Description
aspartic proteinase A1 (APA1); FUNCTIONS IN: endopeptidase activity; INVOLVED IN: proteolysis, response to salt stress; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Saposin-like (InterPro:IPR011001), Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Saposin-like type B, 1 (InterPro:IPR007856), Saposin-like type B, 2 (InterPro:IPR008138), Saposin B (InterPro:IPR008139), Peptidase A1 (InterPro:IPR001461), Peptidase aspartic, active site (InterPro:IPR001969); BEST Arabidopsis thaliana protein match is: Saposin-like aspartyl protease family protein (TAIR:AT1G62290.2); Has 7443 Blast hits to 5200 proteins in 420 species: Archae - 0; Bacteria - 2; Metazoa - 4134; Fungi - 1703; Plants - 675; Viruses - 0; Other Eukaryotes - 929 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G11915.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17350.1); Has 261 Blast hits to 261 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 261; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22980.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22970.1); Has 52 Blast hits to 50 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR