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13-0560-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16120226 [Map]; Strand: c
      • AT2G38500.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -1118; Region: intergenic
      • AT2G38510.1 - [+] show detail - MATE efflux family protein
        Distance: -3759; Region: intergenic
    Flanking Genome Sequence: 13-0560-1 - 5-prime edge 
    CCTACATTNA TTACCTACAT AATTTTAATA TCGTTNGTNA GACAACAAAC 
    AACTTCCTTT TATATGTATT TAGATTTAAA TATTATTCTA TAAATAGTTC 
    TTGGCTTCGT CTTATTCGTT TTGATAGTTA AAAATTTGTC ATTTGTATAT 
    ATTGCCCGAA AAAACCGANG GAGTAAAATT TTAATTAGTA ATCTAAAGGG 
    GACCATTGTC GAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 16120331 [Map]; Strand: c
      • AT2G38500.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: -1223; Region: intergenic
      • AT2G38510.1 - [+] show detail - MATE efflux family protein
        Distance: -3654; Region: intergenic
    Flanking Genome Sequence: 13-0560-1 - 3-prime edge 
    NNTGGNTGGG ATNNTNAACN NAGNGNGGGN CGNACANACN NTGNAGTNTA 
    GTNNCCGGAT CCTGANNTGA ANTGTNGGGA NGCNTGANAN ANTGAAGAAN 
    GAANNCANNN TNGGNGNACT CATNTCTCNA TCACCNATAA CNGAGGCCTG 
    TATTTCANAC ANTGGTCANT TTNTCNANGA AATTNACTNA TNTTAATANA 
    ATTGCAACTA ANNTGCCTTT AATATGACAC CATNATTGGN TNTGTTTTTN 
    ACNCAATTTC TACATTATCN AATAAATTTA TAGTCTAACT TGTGTATTGC 
    ATGCAACTAN AAGCTCTTAA NCACCATTAT TNATTTNATG GTTTTTTCCT 
    TTCANCAATG TATGATAATC ATGATGTTNA TNCTTANGTT NACCANAATG 
    ATTCGGANTA TANAAAAAAT NTTGGGAGAA GGAATCNTAA ANGTAACAAA 
    GAATATAAAA ACTCATTTCA TANCGTAATT NTTAAAAAAC ATTACATNAA 
    CATTANTACA AATTGNTTTA CTGATGTAAT TTTTTNTCAT TTCGTGGACN 
    GNNTAATCAA NTTTNTGGCN ACANCNTAAA AAATTGGATN NATAGGGNTN 
    GNGNNTTTTN ANNAAAGGGN CCGNNANNNG GGTTTTNATT TTTNNNNNAN 
    NANNACATAN TTGTNANAAG CCNNATNTNN GTTNNNNNNA ANNNTTGANN 
    GNAANTNTTN NAANCNNNNA NANNNNGANG TNNGGGTANN NGGGGNNNCN 
    NNNAAAGNNN AAGN

AT2G38500.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Has 51 Blast hits to 51 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G38510.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G58340.1); Has 11945 Blast hits to 11897 proteins in 2040 species: Archae - 292; Bacteria - 8615; Metazoa - 143; Fungi - 328; Plants - 1321; Viruses - 0; Other Eukaryotes - 1246 (source: NCBI BLink).
Link
InterPro Scan - TAIR