1. Home
  2. Mutant Lines
  3. 13-0604-1

13-0604-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29575438 [Map]; Strand: w
      • AT1G78620.1 - [+] show detail - Protein of unknown function DUF92, transmembrane
        Distance: 0; Region: exon1 (CDS)
      • AT1G78620.2 - [+] show detail - Protein of unknown function DUF92, transmembrane
        Distance: 0; Region: exon1 (CDS)
      • AT1G78630.1 - [+] show detail - Ribosomal protein L13 family protein
        Distance: -518; Region: promoter
    Flanking Genome Sequence: 13-0604-1 - 5-prime edge
    CCAGCAGAGC CATAAGCTCT CCAAGTTAAA GTACCAAGCA AAAACGCGGC 
    GGCGATCCCA GAAGCGGACA ATCCGGTAAC AAGAAGCGGT GAACCGAGAA
    CAAAAATCAA TAAATTGTTA GCCACAGCTG ATTTCCAAGT TGGTGACGCC
    GATTGAATCA GTTTCATCGC CTCCGTCATC ACTCCTTCCA TCGATGCAGC
    CGCCGCCGTA GCACCGTCGG CTCTACTTCC CGACGAAAGC ATTCCGTTGG
    AAAGNGGTTC CAGATTACGT CGTCCAAATC TGTAAGATCT AGCGAATGGA
    GAGGAAGAAG AAAATCCCGA GAATTTTGGG AATCTTAGNG GTAAAGCTGA
    TCTANAANAA TTTAAGAGTA GAGTTGACGA AATCGTTGCC ATGACTTAGC
    TTGCTTCCGA ANAANACCTT TCTCTCCTAT TGAGAAAAAA AAAAAAAAAN
    NTTTTTTGGG GGNNAANCCG GGNCCCCAAA AAAANCCGGG NNNANNNCCC
    GGGGNNGGNA NNCCNGGGGN NNNTTT
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 29575374 [Map]; Strand: w
      • AT1G78620.1 - [+] show detail - Protein of unknown function DUF92, transmembrane
        Distance: 0; Region: exon1 (CDS)
      • AT1G78620.2 - [+] show detail - Protein of unknown function DUF92, transmembrane
        Distance: 0; Region: exon1 (CDS)
      • AT1G78630.1 - [+] show detail - Ribosomal protein L13 family protein
        Distance: -582; Region: promoter
    Flanking Genome Sequence: 13-0604-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TGTCTGCTGG TTTCCTCTTA GTCGCTGCTT ACTTCGTCAT AGTAAGTGCA
    TTTGTGATCA ACCTGAATGT AATTCGGTAA CTGACTCTTA GAACGTAGAA
    ATTCGCTGCT TTGATTTTGA TTTCGAGCTG ATGAATGAAG AATGTCCTTA
    GATTTTAGAT GTGATTGTTT AATTTAGGAA TTGTGGACGT GTTAGAGATC
    CTAAATCACG TTTACAGATT AAGGAGCTAC TTTTTCTGAT CATGCTCAAC
    ATTGAGATAC TTAGTCTTTT CTCTGCAATG CTTTAAGTTT TAGATTTCAA
    TATCGTGTTT CACCCCAGAG CTGGAAATAG TAACAGTAAA TTTGCAATTG
    ATTCTGGCGC TGAAGTTGGT TTAGATGATT TACAATATCA CAGGGAACAG
    CGGCAACGAA GGTTAAAATG ACGCAAAAGG AAGCACAAGG TGTGGCCGAA
    AAGAGAAAGG GTNGAANAGG ACCACNCACT GTGATTGGTT CAAGTGCTGC
    TGGTTGTGTC TGTGCTTTTC TTTCAATATA TCAAGGGGGA GGAGCAGCTT
    TTTCCCANCT TTTCNGCTTG GNTTTGTTTN CANNTTNTGC CCTAAAANAT
    NTNACACTGT NTNNAGCGAG ANANGNAAAN NTNCCNNCCC NGGCCGNNNN
    NANNC

AT1G78620.1

Model type
Protein coding
Short Description
Protein of unknown function DUF92, transmembrane
Computational Description
Protein of unknown function DUF92, transmembrane; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 865 Blast hits to 865 proteins in 301 species: Archae - 133; Bacteria - 238; Metazoa - 78; Fungi - 68; Plants - 85; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G78620.2

Model type
Protein coding
Short Description
Protein of unknown function DUF92, transmembrane
Computational Description
Protein of unknown function DUF92, transmembrane; LOCATED IN: chloroplast, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G78630.1

Model type
Protein coding
Short Description
Ribosomal protein L13 family protein
Computational Description
embryo defective 1473 (emb1473); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: thylakoid, ribosome, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13, bacterial-type (InterPro:IPR005823), Ribosomal protein L13 (InterPro:IPR005822); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT3G01790.2); Has 8725 Blast hits to 8725 proteins in 2839 species: Archae - 248; Bacteria - 5258; Metazoa - 358; Fungi - 293; Plants - 251; Viruses - 0; Other Eukaryotes - 2317 (source: NCBI BLink).
Link
InterPro Scan - TAIR