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Mutant Lines
13-0604-1

13-0604-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 29575438 [Map]; Strand: w
- AT1G78620.1 - [+] show detail - Protein of unknown function DUF92, transmembrane
  Distance: 0; Region: exon1 (CDS)
- AT1G78620.2 - [+] show detail - Protein of unknown function DUF92, transmembrane
  Distance: 0; Region: exon1 (CDS)
- AT1G78630.1 - [+] show detail - Ribosomal protein L13 family protein
  Distance: -518; Region: promoter

CCAGCAGAGC CATAAGCTCT CCAAGTTAAA GTACCAAGCA AAAACGCGGC 
GGCGATCCCA GAAGCGGACA ATCCGGTAAC AAGAAGCGGT GAACCGAGAA 
CAAAAATCAA TAAATTGTTA GCCACAGCTG ATTTCCAAGT TGGTGACGCC 
GATTGAATCA GTTTCATCGC CTCCGTCATC ACTCCTTCCA TCGATGCAGC 
CGCCGCCGTA GCACCGTCGG CTCTACTTCC CGACGAAAGC ATTCCGTTGG 
AAAGNGGTTC CAGATTACGT CGTCCAAATC TGTAAGATCT AGCGAATGGA 
GAGGAAGAAG AAAATCCCGA GAATTTTGGG AATCTTAGNG GTAAAGCTGA 
TCTANAANAA TTTAAGAGTA GAGTTGACGA AATCGTTGCC ATGACTTAGC 
TTGCTTCCGA ANAANACCTT TCTCTCCTAT TGAGAAAAAA AAAAAAAAAN 
NTTTTTTGGG GGNNAANCCG GGNCCCCAAA AAAANCCGGG NNNANNNCCC 
GGGGNNGGNA NNCCNGGGGN NNNTTT

3 prime edge [+] show sequence

Chromosome: 1; Position: 29575374 [Map]; Strand: w
- AT1G78620.1 - [+] show detail - Protein of unknown function DUF92, transmembrane
  Distance: 0; Region: exon1 (CDS)
- AT1G78620.2 - [+] show detail - Protein of unknown function DUF92, transmembrane
  Distance: 0; Region: exon1 (CDS)
- AT1G78630.1 - [+] show detail - Ribosomal protein L13 family protein
  Distance: -582; Region: promoter

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
TGTCTGCTGG TTTCCTCTTA GTCGCTGCTT ACTTCGTCAT AGTAAGTGCA 
TTTGTGATCA ACCTGAATGT AATTCGGTAA CTGACTCTTA GAACGTAGAA 
ATTCGCTGCT TTGATTTTGA TTTCGAGCTG ATGAATGAAG AATGTCCTTA 
GATTTTAGAT GTGATTGTTT AATTTAGGAA TTGTGGACGT GTTAGAGATC 
CTAAATCACG TTTACAGATT AAGGAGCTAC TTTTTCTGAT CATGCTCAAC 
ATTGAGATAC TTAGTCTTTT CTCTGCAATG CTTTAAGTTT TAGATTTCAA 
TATCGTGTTT CACCCCAGAG CTGGAAATAG TAACAGTAAA TTTGCAATTG 
ATTCTGGCGC TGAAGTTGGT TTAGATGATT TACAATATCA CAGGGAACAG 
CGGCAACGAA GGTTAAAATG ACGCAAAAGG AAGCACAAGG TGTGGCCGAA 
AAGAGAAAGG GTNGAANAGG ACCACNCACT GTGATTGGTT CAAGTGCTGC 
TGGTTGTGTC TGTGCTTTTC TTTCAATATA TCAAGGGGGA GGAGCAGCTT 
TTTCCCANCT TTTCNGCTTG GNTTTGTTTN CANNTTNTGC CCTAAAANAT 
NTNACACTGT NTNNAGCGAG ANANGNAAAN NTNCCNNCCC NGGCCGNNNN 
NANNC

AT1G78620.1

Model type: Protein coding
Short Description: Protein of unknown function DUF92, transmembrane
Computational Description: Protein of unknown function DUF92, transmembrane; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 865 Blast hits to 865 proteins in 301 species: Archae - 133; Bacteria - 238; Metazoa - 78; Fungi - 68; Plants - 85; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G78620.2

Model type: Protein coding
Short Description: Protein of unknown function DUF92, transmembrane
Computational Description: Protein of unknown function DUF92, transmembrane; LOCATED IN: chloroplast, chloroplast inner membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G78630.1

Model type: Protein coding
Short Description: Ribosomal protein L13 family protein
Computational Description: embryo defective 1473 (emb1473); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: thylakoid, ribosome, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13, bacterial-type (InterPro:IPR005823), Ribosomal protein L13 (InterPro:IPR005822); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT3G01790.2); Has 8725 Blast hits to 8725 proteins in 2839 species: Archae - 248; Bacteria - 5258; Metazoa - 358; Fungi - 293; Plants - 251; Viruses - 0; Other Eukaryotes - 2317 (source: NCBI BLink).
Link: InterPro Scan - TAIR