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13-0611-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 166665 [Map]; Strand: w
      • AT3G01430.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TA...
        Distance: -418; Region: promoter
      • AT3G01435.1 - [+] show detail - Expressed protein
        Distance: 0; Region: exon4 (3UTR)
    Flanking Genome Sequence: 13-0611-1 - 5-prime edge 
    CTCCCAGTGG ATGTAATGTA TCTAATATTC TTGGAACAGA TTCATTGCAA 
    GTGAATGTTC TAACCAAAAT CACCTAATCT TTTTGCAAAA TCTAATATAG 
    TAAGTAGGAT AATATCTTAC TTTTGCAACA AGCCACTCAT TCGTAAAAAC 
    CGGACATACT TTAATGGGAT AACCTACAAG TCTACAACTC ATCTGGAAAC 
    TATNTNACAN CCGANGGTTT AGTATAGCTC TTCAAGTAAC CTTTTTATGN 
    GGCCCNATAT CAATCAAAAA AAGGATACCG GTCANNAAAA AGTTTCAAAT 
    CTTCAAGCTG NGNGANAACA TATTNAANTT NTCANCCCGG GNCGGGNGAN 
    CACNCNTTNN NTANANNNNN NNNNGGGGGG NNGGGGAGAT AAAAAAAAAA 
    CCCNANNC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 166549 [Map]; Strand: w
      • AT3G01430.1 - [+] show detail - BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TA...
        Distance: -302; Region: promoter
    Flanking Genome Sequence: 13-0611-1 - 3-prime edge 
    ACTGGGAGTT ATCAATTTCA GCTTATGGAG AAATCGAACC AATTTTGGGC 
    CAGAGAGAAA CGGACCAATT TTATTGCGGT TTAATGTATC GATCAATACT 
    TGGAACCAAA TGTGCTAACG TCAATTACNG TATATGAACC CCTTCATTCA 
    TATGTGGTTT AATAAATTAA TAGCATCAAC AGCTGAAATT CCCGGTTAGA 
    TGTGATAAAA CCAAAGCGGT TAAAAAGGGT TAATGAGAAC CAATATTGCC 
    GGGTTGGCGG TTACGCCGTT TTGTGCTCTT CTGTTTTAGT TACAGCTCAA 
    GAGACGCGTT GATTGGAGAA GGTGATAGAA ATCTCTTGGG TAGAGGGAGA 
    AAATTAGGGT TTAGAGTTGG AGATGAGAAG AGGAACGACG ATCTAAGGAG 
    ACAAAAGAGA GTAGCTAGAT CAGGACGAAA TTCCATATTT CCTTCGTTTC 
    TCTTTCTCTC TGAGAATGAG TCATCAATCG CCGCCGATCG CTGAAGTTGA 
    TGCCACCGAC GATATGCACG AGGCGTTGTT CGCGAAGCGA GGTTGTTGTT 
    TCCTCATGCC CTGCCTTGCC TCATCTCANC CATCAACTCN CGGCGGATCT 
    GTGTGGTGGC AATCACGACC GTNGACAAAC TCNAACCCCN ATGAGCGATG 
    GTGGATCACC ANCCCGGGCC GTNNACCACN CNTGCCCCTA T

AT3G01430.1

Model type
Protein coding
Computational Description
BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01435.1

Model type
Protein coding
Short Description
Expressed protein
Computational Description
Expressed protein; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med11 (InterPro:IPR019404); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR