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13-0653-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 618213 [Map]; Strand: w
      • AT2G02340.1 - [+] show detail - phloem protein 2-B8
        Distance: -939; Region: promoter
      • AT2G02350.1 - [+] show detail - SKP1 interacting partner 3
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-0653-1 - 5-prime edge 
    CCATCCACCC ATCTTCTCTC AACTCTGGTT TCGCCACCAC TTTCCTCTTT 
    CGAGCCTGCC CCTTCCCATG CGTATCAAAG CATATGAAAC TTCTAAAAGA 
    CTCCTCTCCC ACTATCCCAA CTACAGCCTC TATAGACACA CCCTTAAAGC 
    CACACCAATT ATCCGCTTTC TTGAACACAA TGTAGACCGA GTAACGAGTT 
    CTTAGAGAAA GGACACGAGT ATTCATTCTG CAATTAAACT CAAACCTATA 
    TGCTTCGCGA AGCGCCGCTA CTGTTTCAAA CCTGCATATC AGTATATCAC 
    TTGGCAACAT AATTATATGA TCGGATTGAG TTGAAATAAC ACAAAGATAA 
    TGAAAAAGGA GTACATACCT AGATTCTGGA CATGGAATCC ATAGGAAACG 
    CTGAGACATA TCTGCCATGC TTGATAGATT CATCGCAGTT GCAGATAACA 
    TTATGCATCT CTTCCCACTC GCTTTCTCTA ACCATAAGCT CTTCGGTTTT 
    CGACAAATAA TCAGAGATAT TTAGTATCAT CAGCACAAGA TAGAACTTCA 
    ACGTTAATTC AATGACTCTA ACATACCAAT TGTAATTTCC CATAACTTCT 
    ACATTGCTAA TTTGTAGTAC ATGATTCTCA GATCGTGTAA ACATAAATAG 
    GTTAAGATTT TTTACCATTT TGCCATCTTC GATTAAAAAA NGATCGTTGC 
    ANANAGAGAA ATAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 618097 [Map]; Strand: w
      • AT2G02340.1 - [+] show detail - phloem protein 2-B8
        Distance: -823; Region: promoter
      • AT2G02350.1 - [+] show detail - SKP1 interacting partner 3
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 13-0653-1 - 3-prime edge 
    GTGGATGGAG ACAGAGATTG GGGAATTCTA TAATGAAGGA GGATTAATGA 
    GTAGTGATGA GGTTGAGATA AGTACTGTAG AGGGTAAATA CGCCCAGCAG 
    AAGCGTGGTT TGGTCATTCT AGGAATTGAA ATCCGTCCTG CGAAAATCCT 
    CAGAGGAGTT TTCGGTTTGT CGTTTGTGAG GCCAAAACAA AGCGTTTAGT 
    TCTAGAGATT GAAATACTCT GATAGTCTTT TAGCTCTTTC TTATTTTGAA 
    AGTGTAAGAG CTTCTGGTTA GACAAAGCAA GCGGGAAAAA GTTGGTGTAC 
    AAATCTATTT TGTAATCATT TGATGATCAA CACCGAAAAA TGTTGCCCAT 
    GTTTTTCGTA GATTCGAAAG AGTAGGAGAG GTTGATGTAC AAATTGGCTT 
    CAGATTCACG ACAAGTTGAA TCCTCGTCTT CTGTCCCCAA AAATCGTCAC 
    TCAAACTTAC TTAGTGCTTA GGAAATTGGA TTATATTTTT GGATTTGGGA 
    TGTCCCCTTA TAAGCTGAAG GTAGAGTGGT GGATCCGTAT GGTCTTAGCC 
    AGGGCCGCCG TATGCTTTGA TCCGGCTTCC GATGAGTAGT TTCTAAGGAG 
    GAAACCCGAA GAAAGGTAAG ATAGGTGAAT GGATGTATCA TTCTAAATTG 
    TTTATGTGAT GATATCCTTT TTAAGTCTTA TTTTTCTAGT ATTGTTANCG 
    TAACGAGTCA AGACTATAT

AT2G02340.1

Model type
Protein coding
Short Description
phloem protein 2-B8
Computational Description
phloem protein 2-B8 (PP2-B8); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: phloem protein 2-B7 (TAIR:AT2G02320.1); Has 560 Blast hits to 546 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 560; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02350.1

Model type
Protein coding
Short Description
SKP1 interacting partner 3
Curator Summary
encodes a protein containing an F-box domain and physically interacts with SCF subunit SKP1/ASK1. The protein also exhibits similarity in sequence to phloem protein 2 (PP2) from cucumber.
Computational Description
SKP1 interacting partner 3 (SKIP3); BEST Arabidopsis thaliana protein match is: phloem protein 2-B10 (TAIR:AT2G02360.1); Has 311 Blast hits to 302 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 311; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR